RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 KIR2DS4P43632 304 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 OR3A1P47881 315 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 EFNB2P52799 333 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 P2RX3P56373 397 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 HERPUD1Q15011 391 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 CRIP3Q6Q6R5 217 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 ZBTB49Q6ZSB9 765 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 KLHDC1Q8N7A1 406 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 OR4S1Q8NGB4 309 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 OR52N4Q8NGI2 321 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 HAVCR2Q8TDQ0 301 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 MALSU1Q96EH3 234 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 CPNE2Q96FN4 548 aaPredicted RBP11.29□□□□□ -0.6
USP4-206ENST00000461553 CLEC7AQ9BXN2 247 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 GAL3ST2Q9H3Q3 398 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 ZCCHC4Q9H5U6 513 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 RHOFQ9HBH0 211 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 HMG20AQ9NP66 347 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 ERVK13-1Q9NX77 482 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 PITPNC1Q9UKF7 332 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 DHDHQ9UQ10 334 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 MYRFQ9Y2G1 1151 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 SIGLEC9Q9Y336 463 aa11.29□□□□□ -0.6
USP4-206ENST00000461553 UBE2J1Q9Y385 318 aaPredicted RBP11.29□□□□□ -0.6
USP4-206ENST00000461553 RPL36Q9Y3U8 105 aaKnown RBP11.29□□□□□ -0.6
USP4-206ENST00000461553 TRGV10A0A0A0MS01 117 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 IGHV2-26A0A0B4J1V2 119 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 IGKV1-12A0A0C4DH73 117 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 LOC100130705A0A1B0GUX0 176 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 PLXNB1O43157 2135 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 SULT1B1O43704 296 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 OR2H2O95918 312 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 IGKV1D-12P01611 117 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 CSF1P09603 554 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 ZNF44P15621 663 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 ERP29P30040 261 aaKnown RBP11.28□□□□□ -0.6
USP4-206ENST00000461553 GBX2P52951 348 aaPredicted RBP11.28□□□□□ -0.6
USP4-206ENST00000461553 SSX2Q16385 188 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 MINOS1Q5TGZ0 78 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 SAXO1Q8IYX7 474 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 DYNAPQ8N1N2 210 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 OR5AK2Q8NH90 309 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 RHOXF1Q8NHV9 184 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 NDNFQ8TB73 568 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 CDCA4Q9BXL8 241 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 TMEM133Q9H2Q1 129 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 ISG20L2Q9H9L3 353 aaKnown RBP11.28□□□□□ -0.6
USP4-206ENST00000461553 AMBNQ9NP70 447 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 MINOS1-NBL1R4GNA1 71 aa11.28□□□□□ -0.6
USP4-206ENST00000461553 ZFPL1O95159 310 aa11.27□□□□□ -0.61
USP4-206ENST00000461553 IL18R1Q13478 541 aa11.27□□□□□ -0.61
USP4-206ENST00000461553 ZSCAN26Q16670 478 aa11.27□□□□□ -0.61
USP4-206ENST00000461553 LPCAT4Q643R3 524 aa11.27□□□□□ -0.61
USP4-206ENST00000461553 SERPINA12Q8IW75 414 aa11.27□□□□□ -0.61
USP4-206ENST00000461553 CHST4Q8NCG5 386 aa11.27□□□□□ -0.61
USP4-206ENST00000461553 ZNF555Q8NEP9 628 aa11.27□□□□□ -0.61
USP4-206ENST00000461553 OR52I1Q8NGK6 324 aa11.27□□□□□ -0.61
USP4-206ENST00000461553 OR5D14Q8NGL3 314 aa11.27□□□□□ -0.61
USP4-206ENST00000461553 PIFOQ8TCI5 191 aa11.27□□□□□ -0.61
USP4-206ENST00000461553 STMN2Q93045 179 aa11.27□□□□□ -0.61
USP4-206ENST00000461553 RDH12Q96NR8 316 aa11.27□□□□□ -0.61
USP4-206ENST00000461553 SLC29A1Q99808 456 aa11.27□□□□□ -0.61
USP4-206ENST00000461553 PDCD1LG2Q9BQ51 273 aa11.27□□□□□ -0.61
USP4-206ENST00000461553 FAM118AQ9NWS6 357 aa11.27□□□□□ -0.61
USP4-206ENST00000461553 MAGEB3O15480 346 aa11.26□□□□□ -0.61
USP4-206ENST00000461553 ALX3O95076 343 aa11.26□□□□□ -0.61
USP4-206ENST00000461553 BAG2O95816 211 aa11.26□□□□□ -0.61
USP4-206ENST00000461553 CSN2P05814 226 aa11.26□□□□□ -0.61
USP4-206ENST00000461553 TMEM225BP0DP42 221 aa11.26□□□□□ -0.61
USP4-206ENST00000461553 VSIG10L2P0DP72 767 aa11.26□□□□□ -0.61
USP4-206ENST00000461553 ZP1P60852 638 aa11.26□□□□□ -0.61
USP4-206ENST00000461553 SLC34A1Q06495 639 aa11.26□□□□□ -0.61
USP4-206ENST00000461553 SCN1BQ07699 218 aa11.26□□□□□ -0.61
USP4-206ENST00000461553 KISS1Q15726 138 aa11.26□□□□□ -0.61
USP4-206ENST00000461553 PDLIM3Q53GG5 364 aaPredicted RBP11.26□□□□□ -0.61
USP4-206ENST00000461553 KLHL22Q53GT1 634 aa11.26□□□□□ -0.61
USP4-206ENST00000461553 ARSJQ5FYB0 599 aaPredicted RBP11.26□□□□□ -0.61
USP4-206ENST00000461553 PRAMEF5Q5TYX0 476 aa11.26□□□□□ -0.61
USP4-206ENST00000461553 OR52W1Q6IF63 320 aa11.26□□□□□ -0.61
USP4-206ENST00000461553 TMEM219Q86XT9 240 aa11.26□□□□□ -0.61
USP4-206ENST00000461553 PARP16Q8N5Y8 322 aa11.26□□□□□ -0.61
USP4-206ENST00000461553 FAM110DQ8TAY7 271 aaPredicted RBP11.26□□□□□ -0.61
USP4-206ENST00000461553 APH1BQ8WW43 257 aa11.26□□□□□ -0.61
USP4-206ENST00000461553 ZNF702PQ9H963 129 aa11.26□□□□□ -0.61
USP4-206ENST00000461553 SMPD3Q9NY59 655 aaPredicted RBP11.26□□□□□ -0.61
USP4-206ENST00000461553 FOXJ3Q9UPW0 622 aa11.26□□□□□ -0.61
USP4-206ENST00000461553 HILPDAQ9Y5L2 63 aa11.26□□□□□ -0.61
USP4-206ENST00000461553 TGP01266 2768 aa11.26□□□□□ -0.61
USP4-206ENST00000461553 A6NDX4 124 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 PEX14O75381 377 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 CD2P06729 351 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 RAB3AP20336 220 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 CDK2P24941 298 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 HTR1DP28221 377 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 PTGFRP43088 359 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 MTNR1BP49286 362 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 RAB13P51153 203 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 DYNLT3P51808 116 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 ARHGDIBP52566 201 aa11.25□□□□□ -0.61
USP4-206ENST00000461553 ATXN7L3Q14CW9 347 aaPredicted RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms