RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 A0A1W2PNM2 257 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 H3BMM0 161 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 K7EN84 100 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 ZNF73O43830 326 aaPredicted RBP1.59□□□□□ -2.15
USP40-209ENST00000452724 HLA-AP01891 365 aaKnown RBP1.59□□□□□ -2.15
USP40-209ENST00000452724 CRYGCP07315 174 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 SCGB1C2P0DMR2 95 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 GZMAP12544 262 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 CBR1P16152 277 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 CRABP2P29373 138 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 LGALS7P47929 136 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 CCL23P55773 120 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 BNIP2Q12982 314 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 DHRS2Q13268 280 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 CEACAM16Q2WEN9 425 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 NKAIN1Q4KMZ8 207 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 TMEM215Q68D42 235 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 SPNS3Q6ZMD2 512 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 DPPA2Q7Z7J5 298 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 GALNT10Q86SR1 603 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 ZNF738Q8NE65 137 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 OR6K3Q8NGY3 331 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 OR51Q1Q8NH59 317 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 SCGB1C1Q8TD33 95 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 DOK4Q8TEW6 326 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 UBE2WQ96B02 151 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 PYURFQ96I23 114 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 BCL7BQ9BQE9 202 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 MAP1LC3CQ9BXW4 147 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 BEX2Q9BXY8 128 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 ANKHQ9HCJ1 492 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 ACOT13Q9NPJ3 140 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 RBM12B-AS1Q9P1G2 102 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 SLC22A14Q9Y267 594 aa1.59□□□□□ -2.15
USP40-209ENST00000452724 SAMHD1Q9Y3Z3 626 aaKnown RBP1.59□□□□□ -2.15
USP40-209ENST00000452724 KIF27Q86VH2 1401 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 MIA3Q5JRA6 1907 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 NUP205Q92621 2012 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 A0A0J9YYE9 177 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 A0A1B0GU33 70 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 RFXANKO14593 260 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 TRBC1P01850 177 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 SOD3P08294 240 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 CECR9P0C854 216 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 STAG3L2P0CL84 134 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 CGB3P0DN86 165 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 CGB7P0DN87 165 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 GTF2F2P13984 249 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 IL12BP29460 328 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 BCL2A1Q16548 175 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 CYHR1Q6ZMK1 362 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 LYZL2Q7Z4W2 148 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 Q8NAQ8 132 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 OR6N2Q8NGY6 317 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 FMC1Q96HJ9 113 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 VAT1Q99536 393 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 ANAPC13Q9BS18 74 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 TM6SF2Q9BZW4 377 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 PLEKHA1Q9HB21 404 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 SDHAF2Q9NX18 166 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 DNAJC27Q9NZQ0 273 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 NAGKQ9UJ70 344 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 FADS3Q9Y5Q0 445 aa1.58□□□□□ -2.16
USP40-209ENST00000452724 NOS1P29475 1434 aa1.57□□□□□ -2.16
USP40-209ENST00000452724 RBFOX3A6NFN3 312 aa1.57□□□□□ -2.16
USP40-209ENST00000452724 FFAR1O14842 300 aa1.57□□□□□ -2.16
USP40-209ENST00000452724 CPN2P22792 545 aa1.57□□□□□ -2.16
USP40-209ENST00000452724 PRTN3P24158 256 aa1.57□□□□□ -2.16
USP40-209ENST00000452724 ZNF83P51522 516 aa1.57□□□□□ -2.16
USP40-209ENST00000452724 XKP51811 444 aa1.57□□□□□ -2.16
USP40-209ENST00000452724 ACTBL2Q562R1 376 aa1.57□□□□□ -2.16
USP40-209ENST00000452724 GLYATQ6IB77 296 aa1.57□□□□□ -2.16
USP40-209ENST00000452724 ERICH5Q6P6B1 374 aa1.57□□□□□ -2.16
USP40-209ENST00000452724 TPGS1Q6ZTW0 290 aa1.57□□□□□ -2.16
USP40-209ENST00000452724 OR2M3Q8NG83 312 aa1.57□□□□□ -2.16
USP40-209ENST00000452724 OR13C9Q8NGT0 318 aa1.57□□□□□ -2.16
USP40-209ENST00000452724 TWIST2Q8WVJ9 160 aa1.57□□□□□ -2.16
USP40-209ENST00000452724 CCL17Q92583 94 aa1.57□□□□□ -2.16
USP40-209ENST00000452724 C20orf166-AS1Q96NR2 134 aa1.57□□□□□ -2.16
USP40-209ENST00000452724 ZNF436Q9C0F3 470 aaPredicted RBP1.57□□□□□ -2.16
USP40-209ENST00000452724 NXF2Q9GZY0 626 aaKnown RBP1.57□□□□□ -2.16
USP40-209ENST00000452724 VCX3AQ9NNX9 186 aa1.57□□□□□ -2.16
USP40-209ENST00000452724 VAPAQ9P0L0 249 aa1.57□□□□□ -2.16
USP40-209ENST00000452724 C14orf166Q9Y224 244 aaKnown RBP1.57□□□□□ -2.16
USP40-209ENST00000452724 U3KQK5 164 aa1.57□□□□□ -2.16
USP40-209ENST00000452724 NRCAMQ92823 1304 aa1.57□□□□□ -2.16
USP40-209ENST00000452724 A6NED7 52 aa1.56□□□□□ -2.16
USP40-209ENST00000452724 OTCP00480 354 aa1.56□□□□□ -2.16
USP40-209ENST00000452724 CD8AP01732 235 aa1.56□□□□□ -2.16
USP40-209ENST00000452724 M6PRP20645 277 aa1.56□□□□□ -2.16
USP40-209ENST00000452724 CNTFRP26992 372 aa1.56□□□□□ -2.16
USP40-209ENST00000452724 ELK4P28324 431 aa1.56□□□□□ -2.16
USP40-209ENST00000452724 HNRNPA1L2Q32P51 320 aaKnown RBP1.56□□□□□ -2.16
USP40-209ENST00000452724 RESP18Q5W5W9 173 aa1.56□□□□□ -2.16
USP40-209ENST00000452724 OR6K2Q8NGY2 324 aa1.56□□□□□ -2.16
USP40-209ENST00000452724 CLHC1Q8NHS4 586 aa1.56□□□□□ -2.16
USP40-209ENST00000452724 BLNKQ8WV28 456 aa1.56□□□□□ -2.16
USP40-209ENST00000452724 CACNG8Q8WXS5 425 aa1.56□□□□□ -2.16
USP40-209ENST00000452724 RAD51AP1Q96B01 352 aa1.56□□□□□ -2.16
USP40-209ENST00000452724 SYT4Q9H2B2 425 aa1.56□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms