RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 PP6455Q8WZ26 134 aa11.64□□□□□ -0.55
SDC1-204ENST00000429035 STMN2Q93045 179 aa11.64□□□□□ -0.55
SDC1-204ENST00000429035 AKR1E2Q96JD6 320 aa11.64□□□□□ -0.55
SDC1-204ENST00000429035 SPACA5Q96QH8 159 aa11.64□□□□□ -0.55
SDC1-204ENST00000429035 SLC25A33Q9BSK2 321 aa11.64□□□□□ -0.55
SDC1-204ENST00000429035 GAL3ST2Q9H3Q3 398 aa11.64□□□□□ -0.55
SDC1-204ENST00000429035 TCRBV4S1A1TA0A5B7 111 aa11.63□□□□□ -0.55
SDC1-204ENST00000429035 SH2D7A6NKC9 451 aaPredicted RBP11.63□□□□□ -0.55
SDC1-204ENST00000429035 SAC3D1A6NKF1 404 aa11.63□□□□□ -0.55
SDC1-204ENST00000429035 MPIG6BO95866 241 aa11.63□□□□□ -0.55
SDC1-204ENST00000429035 LPLP06858 475 aa11.63□□□□□ -0.55
SDC1-204ENST00000429035 ATF1P18846 271 aa11.63□□□□□ -0.55
SDC1-204ENST00000429035 PRKACBP22694 351 aa11.63□□□□□ -0.55
SDC1-204ENST00000429035 CDK2P24941 298 aa11.63□□□□□ -0.55
SDC1-204ENST00000429035 EFNB1P98172 346 aa11.63□□□□□ -0.55
SDC1-204ENST00000429035 ZNF85Q03923 595 aa11.63□□□□□ -0.55
SDC1-204ENST00000429035 SCN1BQ07699 218 aa11.63□□□□□ -0.55
SDC1-204ENST00000429035 RBM39Q14498 530 aaKnown RBP11.63□□□□□ -0.55
SDC1-204ENST00000429035 ABCA11PQ4W5N1 156 aa11.63□□□□□ -0.55
SDC1-204ENST00000429035 FOXB2Q5VYV0 432 aa11.63□□□□□ -0.55
SDC1-204ENST00000429035 CENPVQ7Z7K6 275 aaPredicted RBP11.63□□□□□ -0.55
SDC1-204ENST00000429035 ABHD12Q8N2K0 398 aa11.63□□□□□ -0.55
SDC1-204ENST00000429035 WIPF2Q8TF74 440 aaPredicted RBP11.63□□□□□ -0.55
SDC1-204ENST00000429035 FGGYQ96C11 551 aa11.63□□□□□ -0.55
SDC1-204ENST00000429035 C10orf35Q96D05 121 aa11.63□□□□□ -0.55
SDC1-204ENST00000429035 OPALINQ96PE5 141 aa11.63□□□□□ -0.55
SDC1-204ENST00000429035 IMPAD1Q9NX62 359 aa11.63□□□□□ -0.55
SDC1-204ENST00000429035 UBE2J1Q9Y385 318 aaPredicted RBP11.63□□□□□ -0.55
SDC1-204ENST00000429035 PCDHGB5Q9Y5G0 923 aa11.63□□□□□ -0.55
SDC1-204ENST00000429035 IGKV1-9A0A0C4DH69 117 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 SH2D1BO14796 132 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 OR2H2O95918 312 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 HTR1AP08908 422 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 FCGR1AP12314 374 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 BRS3P32247 399 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 KPNB1Q14974 876 aaKnown RBP11.62□□□□□ -0.55
SDC1-204ENST00000429035 ATXN7L3Q14CW9 347 aaPredicted RBP11.62□□□□□ -0.55
SDC1-204ENST00000429035 SPIN3Q5JUX0 258 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 TMEM244Q5VVB8 128 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 C16orf82Q7Z2V1 217 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 DNAAF1Q8NEP3 725 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 OR4X2Q8NGF9 303 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 OR13C3Q8NGS6 347 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 OR13C9Q8NGT0 318 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 OR2G2Q8NGZ5 317 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 ZNF596Q8TC21 504 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 RFKQ969G6 155 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 EME1Q96AY2 570 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 OCSTAMPQ9BR26 566 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 DPM3Q9P2X0 92 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 OAZ3Q9UMX2 235 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 AP4S1Q9Y587 144 aa11.62□□□□□ -0.55
SDC1-204ENST00000429035 FUOMA2VDF0 154 aa11.61□□□□□ -0.55
SDC1-204ENST00000429035 HSPB6O14558 160 aa11.61□□□□□ -0.55
SDC1-204ENST00000429035 TOR1AO14656 332 aa11.61□□□□□ -0.55
SDC1-204ENST00000429035 GDNFP39905 211 aa11.61□□□□□ -0.55
SDC1-204ENST00000429035 PTGFRP43088 359 aa11.61□□□□□ -0.55
SDC1-204ENST00000429035 OR3A4PP47883 348 aa11.61□□□□□ -0.55
SDC1-204ENST00000429035 GLIPR1P48060 266 aa11.61□□□□□ -0.55
SDC1-204ENST00000429035 CDC42P60953 191 aa11.61□□□□□ -0.55
SDC1-204ENST00000429035 SLC35A2P78381 396 aa11.61□□□□□ -0.55
SDC1-204ENST00000429035 AESQ08117 197 aa11.61□□□□□ -0.55
SDC1-204ENST00000429035 ZNF146Q15072 292 aa11.61□□□□□ -0.55
SDC1-204ENST00000429035 OR52W1Q6IF63 320 aa11.61□□□□□ -0.55
SDC1-204ENST00000429035 OR8J1Q8NGP2 316 aa11.61□□□□□ -0.55
SDC1-204ENST00000429035 SPSB1Q96BD6 273 aa11.61□□□□□ -0.55
SDC1-204ENST00000429035 GABARAPL3Q9BY60 117 aa11.61□□□□□ -0.55
SDC1-204ENST00000429035 ZNF286AQ9HBT8 521 aa11.61□□□□□ -0.55
SDC1-204ENST00000429035 HMG20AQ9NP66 347 aa11.61□□□□□ -0.55
SDC1-204ENST00000429035 TSSC4Q9Y5U2 329 aaPredicted RBP11.61□□□□□ -0.55
SDC1-204ENST00000429035 IGKV1-12A0A0C4DH73 117 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 DAPL1A0PJW8 107 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 FAM90A22PA8MWA6 464 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 LEUTXA8MZ59 168 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 CLIC3O95833 236 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 IGKV1D-12P01611 117 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 HCKP08631 526 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 NFYBP25208 207 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 ERP29P30040 261 aaKnown RBP11.6□□□□□ -0.55
SDC1-204ENST00000429035 GLP1RP43220 463 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 CD83Q01151 205 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 BNIP1Q12981 228 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 PDZK1IP1Q13113 114 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 KRBOX4Q5JUW0 171 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 LPCAT4Q643R3 524 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 C10orf99Q6UWK7 81 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 UTS2BQ765I0 119 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 RTN4RL2Q86UN3 420 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 OR4D6Q8NGJ1 314 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 OR51A4Q8NGJ6 313 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 OR10AC1Q8NH08 325 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 MYDGFQ969H8 173 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 RNFT2Q96EX2 444 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 LIN7BQ9HAP6 207 aa11.6□□□□□ -0.55
SDC1-204ENST00000429035 DNAH3Q8TD57 4116 aa11.59□□□□□ -0.55
SDC1-204ENST00000429035 ODAMA1E959 279 aa11.59□□□□□ -0.55
SDC1-204ENST00000429035 J3QLW9 94 aa11.59□□□□□ -0.55
SDC1-204ENST00000429035 OR2F2O95006 317 aa11.59□□□□□ -0.55
SDC1-204ENST00000429035 ZNF19P17023 458 aa11.59□□□□□ -0.55
SDC1-204ENST00000429035 CEACAM3P40198 252 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms