RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 TEX29Q8N6K0 151 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 ZNF383Q8NA42 475 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 OR6K6Q8NGW6 343 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 SLC25A40Q8TBP6 338 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 KLF14Q8TD94 323 aaPredicted RBP5.27□□□□□ -1.57
USP40-202ENST00000409945 FCGR1BQ92637 280 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 RORBQ92753 470 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 RAB1CQ92928 201 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 FOXN4Q96NZ1 517 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 GPA33Q99795 319 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 ATF6BQ99941 703 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 OR2J1Q9GZK6 312 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 CCDC90BQ9GZT6 254 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 YAE1D1Q9NRH1 226 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 PLCXD1Q9NUJ7 323 aa5.27□□□□□ -1.57
USP40-202ENST00000409945 SETD2Q9BYW2 2564 aaPredicted RBP5.26□□□□□ -1.57
USP40-202ENST00000409945 VPS13CQ709C8 3753 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 IGLV1-36A0A0B4J1U3 117 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 TMEM129A0AVI4 362 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 CLDN25C9JDP6 229 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 PRR23D1E9PI22 279 aaPredicted RBP5.26□□□□□ -1.57
USP40-202ENST00000409945 F5H5K5 113 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 BHLHE40O14503 412 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 PPIHO43447 177 aaKnown RBP5.26□□□□□ -1.57
USP40-202ENST00000409945 PRAF2O60831 178 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 SOX14O95416 240 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 PRR23D2P0DMB1 279 aaPredicted RBP5.26□□□□□ -1.57
USP40-202ENST00000409945 GIFP27352 417 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 HSD11B1P28845 292 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 MNDAP41218 407 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 LUMP51884 338 aaPredicted RBP5.26□□□□□ -1.57
USP40-202ENST00000409945 SLC25A1P53007 311 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 FXYD6P3P58550 94 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 ERVFC1-1P60608 527 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 CDC42P60953 191 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 TMEM249Q2WGJ8 235 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 ALKBH6Q3KRA9 238 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 SPATA46Q5T0L3 261 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 PET117Q6UWS5 81 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 IL17RELQ6ZVW7 336 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 Q71RC1 249 aaPredicted RBP5.26□□□□□ -1.57
USP40-202ENST00000409945 HIST2H2ABQ8IUE6 130 aaPredicted RBP5.26□□□□□ -1.57
USP40-202ENST00000409945 CROCCP3Q8IVE0 287 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 ENTHD1Q8IYW4 607 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 OR6V1Q8N148 313 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 SLC26A10Q8NG04 563 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 MYDGFQ969H8 173 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 RAB39BQ96DA2 213 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 TSSK2Q96PF2 358 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 SMR3AQ99954 134 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 SHARPINQ9H0F6 387 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 CMC2Q9NRP2 79 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 PAK1IP1Q9NWT1 392 aaPredicted RBP5.26□□□□□ -1.57
USP40-202ENST00000409945 IMPAD1Q9NX62 359 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 WARS2Q9UGM6 360 aaKnown RBP5.26□□□□□ -1.57
USP40-202ENST00000409945 ARFGEF3Q5TH69 2177 aa5.26□□□□□ -1.57
USP40-202ENST00000409945 NIPBLQ6KC79 2804 aaeCLIP5.26□□□□□ -1.57
USP40-202ENST00000409945 IGHV1-69-2A0A0G2JMI3 117 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 A0A1W2PRV1 198 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 SLC22A1O15245 554 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 RER1O15258 196 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 WBP4O75554 376 aaKnown RBP5.25□□□□□ -1.57
USP40-202ENST00000409945 LY6HO94772 140 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 LINC01547P58512 204 aaPredicted RBP5.25□□□□□ -1.57
USP40-202ENST00000409945 GRB2P62993 217 aaKnown RBP5.25□□□□□ -1.57
USP40-202ENST00000409945 CCL8P80075 99 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 TNFAIP6P98066 277 aaPredicted RBP5.25□□□□□ -1.57
USP40-202ENST00000409945 EMX1Q04741 257 aaPredicted RBP5.25□□□□□ -1.57
USP40-202ENST00000409945 CHRFAM7AQ494W8 412 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 WDR38Q5JTN6 314 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 SYT6Q5T7P8 510 aaPredicted RBP5.25□□□□□ -1.57
USP40-202ENST00000409945 LCN1P1Q5VSP4 162 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 ZNF770Q6IQ21 691 aaPredicted RBP5.25□□□□□ -1.57
USP40-202ENST00000409945 LINC00299Q6ZSB3 139 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 MRPL21Q7Z2W9 205 aaKnown RBP5.25□□□□□ -1.57
USP40-202ENST00000409945 LRP11Q86VZ4 500 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 ZNF101Q8IZC7 436 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 ZCCHC24Q8N2G6 241 aaKnown RBP5.25□□□□□ -1.57
USP40-202ENST00000409945 CYB561A3Q8NBI2 242 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 SLC37A3Q8NCC5 494 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 MAPK1IP1LQ8NDC0 245 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 OR13G1Q8NGZ3 307 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 RHOXF1Q8NHV9 184 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 FAM81AQ8TBF8 368 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 ST6GAL2Q96JF0 529 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 COPS4Q9BT78 406 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 DCUN1D5Q9BTE7 237 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 BPESC1Q9GZL8 116 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 SLC22A4Q9H015 551 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 ENPP5Q9UJA9 477 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 LRRC30A6NM36 301 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 KRTAP29-1A8MX34 341 aaPredicted RBP5.25□□□□□ -1.57
USP40-202ENST00000409945 PRR32B1ATL7 298 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 ZNF878C9JN71 531 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 L7N2F9 121 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 M0R135 149 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 BUB3O43684 328 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 SELENOFO60613 162 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 GABARAPO95166 117 aa5.25□□□□□ -1.57
USP40-202ENST00000409945 MPZL1O95297 269 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms