RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 VMO1Q7Z5L0 202 aa17.86■□□□□ 0.45
CLN3-207ENST00000395653 PHC2Q8IXK0 858 aa17.86■□□□□ 0.45
CLN3-207ENST00000395653 Q8N7P7 452 aa17.86■□□□□ 0.45
CLN3-207ENST00000395653 OR51T1Q8NGJ9 327 aa17.86■□□□□ 0.45
CLN3-207ENST00000395653 PPP1R35Q8TAP8 253 aa17.86■□□□□ 0.45
CLN3-207ENST00000395653 C22orf15Q8WYQ4 148 aa17.86■□□□□ 0.45
CLN3-207ENST00000395653 S100A13Q99584 98 aa17.86■□□□□ 0.45
CLN3-207ENST00000395653 SLC6A7Q99884 636 aa17.86■□□□□ 0.45
CLN3-207ENST00000395653 SUCNR1Q9BXA5 334 aa17.86■□□□□ 0.45
CLN3-207ENST00000395653 MS4A7Q9GZW8 240 aaPredicted RBP17.86■□□□□ 0.45
CLN3-207ENST00000395653 CENPVL3A0A0U1RRI6 287 aa17.85■□□□□ 0.45
CLN3-207ENST00000395653 A0A1W2PPH5 198 aa17.85■□□□□ 0.45
CLN3-207ENST00000395653 MEGF11A6BM72 1044 aa17.85■□□□□ 0.45
CLN3-207ENST00000395653 PSPNO60542 156 aa17.85■□□□□ 0.45
CLN3-207ENST00000395653 ZNF780AO75290 641 aaPredicted RBP17.85■□□□□ 0.45
CLN3-207ENST00000395653 OR2H2O95918 312 aa17.85■□□□□ 0.45
CLN3-207ENST00000395653 GABRR1P24046 479 aa17.85■□□□□ 0.45
CLN3-207ENST00000395653 METAP1DQ6UB28 335 aaPredicted RBP17.85■□□□□ 0.45
CLN3-207ENST00000395653 CEACAM19Q7Z692 300 aa17.85■□□□□ 0.45
CLN3-207ENST00000395653 LYPD6Q86Y78 171 aa17.85■□□□□ 0.45
CLN3-207ENST00000395653 CHST4Q8NCG5 386 aa17.85■□□□□ 0.45
CLN3-207ENST00000395653 PHYHIPQ92561 330 aa17.85■□□□□ 0.45
CLN3-207ENST00000395653 TMEM203Q969S6 136 aa17.85■□□□□ 0.45
CLN3-207ENST00000395653 METTL9Q9H1A3 318 aa17.85■□□□□ 0.45
CLN3-207ENST00000395653 UNKLQ9H9P5 680 aaKnown RBP17.85■□□□□ 0.45
CLN3-207ENST00000395653 TCF7L1Q9HCS4 588 aa17.85■□□□□ 0.45
CLN3-207ENST00000395653 SF3B6Q9Y3B4 125 aaKnown RBP17.85■□□□□ 0.45
CLN3-207ENST00000395653 LRRC42Q9Y546 428 aa17.85■□□□□ 0.45
CLN3-207ENST00000395653 SIRPB1O00241 398 aa17.84■□□□□ 0.45
CLN3-207ENST00000395653 CDRT1O95170 752 aa17.84■□□□□ 0.45
CLN3-207ENST00000395653 UCHL1P09936 223 aa17.84■□□□□ 0.45
CLN3-207ENST00000395653 ZNF44P15621 663 aa17.84■□□□□ 0.45
CLN3-207ENST00000395653 GABRA5P31644 462 aa17.84■□□□□ 0.45
CLN3-207ENST00000395653 GP2P55259 537 aaKnown RBP17.84■□□□□ 0.45
CLN3-207ENST00000395653 RPS25P62851 125 aaKnown RBP17.84■□□□□ 0.45
CLN3-207ENST00000395653 BLMHQ13867 455 aa17.84■□□□□ 0.45
CLN3-207ENST00000395653 IL13RA2Q14627 380 aa17.84■□□□□ 0.45
CLN3-207ENST00000395653 GRK1Q15835 563 aa17.84■□□□□ 0.45
CLN3-207ENST00000395653 HSD17B12Q53GQ0 312 aa17.84■□□□□ 0.45
CLN3-207ENST00000395653 FAM27D1Q5T7N8 215 aa17.84■□□□□ 0.45
CLN3-207ENST00000395653 TMEM200BQ69YZ2 307 aa17.84■□□□□ 0.45
CLN3-207ENST00000395653 Q6P435 159 aa17.84■□□□□ 0.45
CLN3-207ENST00000395653 SPARTQ8N0X7 666 aa17.84■□□□□ 0.45
CLN3-207ENST00000395653 JAGN1Q8N5M9 183 aa17.84■□□□□ 0.45
CLN3-207ENST00000395653 OR4M1Q8NGD0 313 aa17.84■□□□□ 0.45
CLN3-207ENST00000395653 OR10K1Q8NGX5 313 aa17.84■□□□□ 0.45
CLN3-207ENST00000395653 LHX4Q969G2 390 aa17.84■□□□□ 0.45
CLN3-207ENST00000395653 METTL8Q9H825 291 aaKnown RBP17.84■□□□□ 0.45
CLN3-207ENST00000395653 SIRT7Q9NRC8 400 aa17.84■□□□□ 0.45
CLN3-207ENST00000395653 ING4Q9UNL4 249 aa17.84■□□□□ 0.45
CLN3-207ENST00000395653 MGST3O14880 152 aa17.83■□□□□ 0.45
CLN3-207ENST00000395653 HTR3BO95264 441 aa17.83■□□□□ 0.45
CLN3-207ENST00000395653 OR3A1P47881 315 aa17.83■□□□□ 0.45
CLN3-207ENST00000395653 EDDM3BP56851 147 aa17.83■□□□□ 0.45
CLN3-207ENST00000395653 HILS1P60008 231 aa17.83■□□□□ 0.45
CLN3-207ENST00000395653 TMEM91Q6ZNR0 172 aa17.83■□□□□ 0.45
CLN3-207ENST00000395653 BCL6BQ8N143 479 aaPredicted RBP17.83■□□□□ 0.45
CLN3-207ENST00000395653 OR4S1Q8NGB4 309 aa17.83■□□□□ 0.45
CLN3-207ENST00000395653 UQCC2Q9BRT2 126 aa17.83■□□□□ 0.45
CLN3-207ENST00000395653 CHST6Q9GZX3 395 aa17.83■□□□□ 0.45
CLN3-207ENST00000395653 PCDHB16Q9NRJ7 776 aa17.83■□□□□ 0.45
CLN3-207ENST00000395653 DEGS1O15121 323 aa17.82■□□□□ 0.44
CLN3-207ENST00000395653 CSTBP04080 98 aaKnown RBP17.82■□□□□ 0.44
CLN3-207ENST00000395653 PRTN3P24158 256 aa17.82■□□□□ 0.44
CLN3-207ENST00000395653 MEF2CQ06413 473 aaPredicted RBP17.82■□□□□ 0.44
CLN3-207ENST00000395653 NHLRC3Q5JS37 347 aa17.82■□□□□ 0.44
CLN3-207ENST00000395653 UBE2UQ5VVX9 321 aa17.82■□□□□ 0.44
CLN3-207ENST00000395653 BRD3OSQ6XYD6 125 aa17.82■□□□□ 0.44
CLN3-207ENST00000395653 OSR2Q8N2R0 312 aa17.82■□□□□ 0.44
CLN3-207ENST00000395653 TNFRSF14Q92956 283 aa17.82■□□□□ 0.44
CLN3-207ENST00000395653 MUL1Q969V5 352 aa17.82■□□□□ 0.44
CLN3-207ENST00000395653 JMJD8Q96S16 334 aa17.82■□□□□ 0.44
CLN3-207ENST00000395653 PPIL3Q9H2H8 161 aaKnown RBP17.82■□□□□ 0.44
CLN3-207ENST00000395653 MRPS28Q9Y2Q9 187 aaKnown RBP17.82■□□□□ 0.44
CLN3-207ENST00000395653 IGHV1-69DA0A0B4J2H0 117 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 A0A0G2JK05 382 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 SLC33A1O00400 549 aaPredicted RBP17.81■□□□□ 0.44
CLN3-207ENST00000395653 RGS9O75916 674 aaPredicted RBP17.81■□□□□ 0.44
CLN3-207ENST00000395653 IGHV1-69P01742 117 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 CSN2P05814 226 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 SRMP19623 302 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 ERP29P30040 261 aaKnown RBP17.81■□□□□ 0.44
CLN3-207ENST00000395653 SCN1BQ07699 218 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 GPR176Q14439 515 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 EDDM3AQ14507 147 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 ZNF273Q14593 569 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 SSX1Q16384 188 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 KCTD21Q4G0X4 260 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 ZNF773Q6PK81 442 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 LRRTM1Q86UE6 522 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 FCGR1BQ92637 280 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 FOXRED1Q96CU9 486 aaPredicted RBP17.81■□□□□ 0.44
CLN3-207ENST00000395653 NR1H4Q96RI1 486 aaPredicted RBP17.81■□□□□ 0.44
CLN3-207ENST00000395653 SLITRK2Q9H156 845 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 FBN1P35555 2871 aaKnown RBP17.81■□□□□ 0.44
CLN3-207ENST00000395653 ARL6IP5O75915 188 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 SERPINA2P20848 420 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 GUCA2AQ02747 115 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 PIGYQ3MUY2 71 aa17.81■□□□□ 0.44
CLN3-207ENST00000395653 SLC22A6Q4U2R8 563 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms