RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 PEG10Q86TG7 708 aaKnown RBP5.79□□□□□ -1.48
LIMA1-202ENST00000394943 TEX29Q8N6K0 151 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 TNFRSF14Q92956 283 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 FAM3DQ96BQ1 224 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 AJUBAQ96IF1 538 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 C18orf12Q96KH6 178 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 TMPRSS13Q9BYE2 586 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 BATF3Q9NR55 127 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 RBFOX1Q9NWB1 397 aaKnown RBP5.79□□□□□ -1.48
LIMA1-202ENST00000394943 GAB2Q9UQC2 676 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 LINC00312Q9Y6C7 94 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 ODF3BA8MYP8 253 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 C15orf65H3BRN8 121 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 ORC5O43913 435 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 OR2H2O95918 312 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 GTF2F2P13984 249 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 SDC2P34741 201 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 ZNF137PP52743 207 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 TMEM50BP56557 158 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 ARL6IP1Q15041 203 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 C2orf76Q3KRA6 126 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 CYB5R2Q6BCY4 276 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 HCP5Q6MZN7 132 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 SLC36A1Q7Z2H8 476 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 LINC00311Q8N616 119 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 Q8N7P7 452 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 OR8B3Q8NGG8 313 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 TNFAIP8L1Q8WVP5 186 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 RAB40AQ8WXH6 277 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 COQ2Q96H96 371 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 OR8B2Q96RD0 313 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 NAA50Q9GZZ1 169 aaKnown RBP5.79□□□□□ -1.48
LIMA1-202ENST00000394943 RIMS4Q9H426 269 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-202ENST00000394943 ABCA2Q9BZC7 2435 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 FAM230AA0A1W2PPH8 454 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 NKX6-3A6NJ46 265 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 SH2D1BO14796 132 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 CDRT1O95170 752 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 GRPP07492 148 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 HSMCR30P0CW71 290 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 HMGN3Q15651 99 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 ODF4Q2M2E3 257 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 FIP1L1Q6UN15 594 aaKnown RBP5.79□□□□□ -1.48
LIMA1-202ENST00000394943 COMMD2Q86X83 199 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 ORAI1Q96D31 301 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 CABLES2Q9BTV7 478 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 SSBP3Q9BWW4 388 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-202ENST00000394943 CST11Q9H112 138 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 WDR13Q9H1Z4 485 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 GLS2Q9UI32 602 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 KCNK7Q9Y2U2 307 aa5.79□□□□□ -1.48
LIMA1-202ENST00000394943 LYNX1G3V0Z9 82 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 PSPNO60542 156 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 PDCD6O75340 191 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 LY6HO94772 140 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 MSMBP08118 114 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 HCKP08631 526 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 LYNX1P0DP58 116 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 OR10A3P58181 314 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 SPCS2Q15005 226 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 AANATQ16613 207 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 ZNF260Q3ZCT1 412 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 UBE2NLQ5JXB2 153 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 SATL1Q86VE3 508 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 TMEM104Q8NE00 496 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 DEFB108BQ8NET1 73 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 DGCR14Q96DF8 476 aaKnown RBP5.78□□□□□ -1.48
LIMA1-202ENST00000394943 RNF167Q9H6Y7 350 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 EXOSC4Q9NPD3 245 aaKnown RBP5.78□□□□□ -1.48
LIMA1-202ENST00000394943 RPUSD1Q9UJJ7 312 aaKnown RBP5.78□□□□□ -1.48
LIMA1-202ENST00000394943 GTF2A1LQ9UNN4 478 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 ABCA4P78363 2273 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 DOPEY2Q9Y3R5 2298 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 SPRY1O43609 319 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-202ENST00000394943 GSTP1P09211 210 aaKnown RBP5.78□□□□□ -1.48
LIMA1-202ENST00000394943 MGMTP16455 207 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 DTYMKP23919 212 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 P2RX3P56373 397 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 PDCD1Q15116 288 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 RAB12Q6IQ22 244 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 ALKBH2Q6NS38 261 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 CIARTQ8N365 385 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-202ENST00000394943 OR4S1Q8NGB4 309 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 OR11H6Q8NGC7 330 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 NPRL2Q8WTW4 380 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 CCL17Q92583 94 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 METRNQ9UJH8 293 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 MGAT4AQ9UM21 535 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 A6NIN4 97 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 H7C1Q1 480 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 SULT1C2O00338 296 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 DVL1O14640 695 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 PITPNBP48739 271 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 DYNLT3P51808 116 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 HTD2P86397 168 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 COL10A1Q03692 680 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 SSBP1Q04837 148 aaKnown RBP5.78□□□□□ -1.48
LIMA1-202ENST00000394943 C17orf58Q2M2W7 97 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 BAIAP2L2Q6UXY1 529 aa5.78□□□□□ -1.48
LIMA1-202ENST00000394943 MOB1BQ7L9L4 216 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms