RNA–Protein interactions for RNA: ENST00000378726.1

SSU72-204, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 2,238 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-204ENST00000378726 CGAP01215 116 aa16.68■□□□□ 0.26
SSU72-204ENST00000378726 PGAM2P15259 253 aa16.68■□□□□ 0.26
SSU72-204ENST00000378726 CBX5P45973 191 aa16.68■□□□□ 0.26
SSU72-204ENST00000378726 PRDX4Q13162 271 aa16.68■□□□□ 0.26
SSU72-204ENST00000378726 NAXEQ8NCW5 288 aa16.68■□□□□ 0.26
SSU72-204ENST00000378726 CSNK2A3Q8NEV1 391 aa16.68■□□□□ 0.26
SSU72-204ENST00000378726 CYYR1Q96J86 154 aa16.68■□□□□ 0.26
SSU72-204ENST00000378726 OPN3Q9H1Y3 402 aaPredicted RBP16.68■□□□□ 0.26
SSU72-204ENST00000378726 OPA3Q9H6K4 179 aa16.68■□□□□ 0.26
SSU72-204ENST00000378726 CRIM1Q9NZV1 1036 aa16.68■□□□□ 0.26
SSU72-204ENST00000378726 FAM215AQ9Y5M1 114 aa16.68■□□□□ 0.26
SSU72-204ENST00000378726 MAP1BP46821 2468 aaKnown RBP16.68■□□□□ 0.26
SSU72-204ENST00000378726 CD300LBA8K4G0 201 aa16.68■□□□□ 0.26
SSU72-204ENST00000378726 GPR31O00270 319 aa16.68■□□□□ 0.26
SSU72-204ENST00000378726 ATG12O94817 140 aa16.68■□□□□ 0.26
SSU72-204ENST00000378726 SERPINF1P36955 418 aa16.68■□□□□ 0.26
SSU72-204ENST00000378726 PDZK1IP1Q13113 114 aa16.68■□□□□ 0.26
SSU72-204ENST00000378726 MRPL49Q13405 166 aaKnown RBP16.68■□□□□ 0.26
SSU72-204ENST00000378726 FAHD2BQ6P2I3 314 aaPredicted RBP16.68■□□□□ 0.26
SSU72-204ENST00000378726 LILRB1Q8NHL6 650 aaPredicted RBP16.68■□□□□ 0.26
SSU72-204ENST00000378726 MARCH1Q8TCQ1 289 aa16.68■□□□□ 0.26
SSU72-204ENST00000378726 FAHD2AQ96GK7 314 aa16.68■□□□□ 0.26
SSU72-204ENST00000378726 ZNF629Q9UEG4 869 aaPredicted RBP16.68■□□□□ 0.26
SSU72-204ENST00000378726 PURGQ9UJV8 347 aaKnown RBP16.68■□□□□ 0.26
SSU72-204ENST00000378726 TMEM218A2RU14 115 aa16.67■□□□□ 0.26
SSU72-204ENST00000378726 FIGNL2A6NMB9 653 aa16.67■□□□□ 0.26
SSU72-204ENST00000378726 CST4P01036 141 aa16.67■□□□□ 0.26
SSU72-204ENST00000378726 IFNA6P05013 189 aa16.67■□□□□ 0.26
SSU72-204ENST00000378726 CRHP06850 196 aa16.67■□□□□ 0.26
SSU72-204ENST00000378726 CPT2P23786 658 aa16.67■□□□□ 0.26
SSU72-204ENST00000378726 PSMB6P28072 239 aa16.67■□□□□ 0.26
SSU72-204ENST00000378726 PTGER4P35408 488 aa16.67■□□□□ 0.26
SSU72-204ENST00000378726 C1orf185Q5T7R7 199 aa16.67■□□□□ 0.26
SSU72-204ENST00000378726 UQCC3Q6UW78 93 aa16.67■□□□□ 0.26
SSU72-204ENST00000378726 RPRMLQ8N4K4 120 aa16.67■□□□□ 0.26
SSU72-204ENST00000378726 WDR31Q8NA23 367 aa16.67■□□□□ 0.26
SSU72-204ENST00000378726 C1orf162Q8NEQ5 155 aaPredicted RBP16.67■□□□□ 0.26
SSU72-204ENST00000378726 PIK3IP1Q96FE7 263 aa16.67■□□□□ 0.26
SSU72-204ENST00000378726 BOD1Q96IK1 185 aa16.67■□□□□ 0.26
SSU72-204ENST00000378726 DBX1A6NMT0 343 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 FOXI3A8MTJ6 420 aaPredicted RBP16.66■□□□□ 0.26
SSU72-204ENST00000378726 MFNGO00587 321 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 DUS4LO95620 317 aaKnown RBP16.66■□□□□ 0.26
SSU72-204ENST00000378726 ADCYAP1P18509 176 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 HOXC12P31275 282 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 PNLIPRP3Q17RR3 467 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 ZNF324BQ6AW86 544 aaPredicted RBP16.66■□□□□ 0.26
SSU72-204ENST00000378726 CXorf67Q86X51 503 aaPredicted RBP16.66■□□□□ 0.26
SSU72-204ENST00000378726 CISD2Q8N5K1 135 aaKnown RBP16.66■□□□□ 0.26
SSU72-204ENST00000378726 BHLHE23Q8NDY6 225 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 OR51F2Q8NH61 342 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 DCUN1D4Q92564 292 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 CDH20Q9HBT6 801 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 CHMP1AQ9HD42 196 aaPredicted RBP16.66■□□□□ 0.26
SSU72-204ENST00000378726 ATMQ13315 3056 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 IGKV1-12A0A0C4DH73 117 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 ZNF98A6NK75 572 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 FGF16O43320 207 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 AGFG2O95081 481 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 IGKV1D-12P01611 117 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 CBR1P16152 277 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 HOXA1P49639 335 aaPredicted RBP16.66■□□□□ 0.26
SSU72-204ENST00000378726 ARFRP1Q13795 201 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 CALHM1Q8IU99 346 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 ZDHHC23Q8IYP9 409 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 PUSL1Q8N0Z8 303 aaKnown RBP16.66■□□□□ 0.26
SSU72-204ENST00000378726 Q96M66 194 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 MICU1Q9BPX6 476 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 RNF126Q9BV68 326 aa16.66■□□□□ 0.26
SSU72-204ENST00000378726 RAB19A4D1S5 217 aa16.65■□□□□ 0.26
SSU72-204ENST00000378726 F8VVB4 439 aa16.65■□□□□ 0.26
SSU72-204ENST00000378726 F8VWA3 439 aa16.65■□□□□ 0.26
SSU72-204ENST00000378726 GABRR1P24046 479 aa16.65■□□□□ 0.26
SSU72-204ENST00000378726 GUCA2BQ16661 112 aa16.65■□□□□ 0.26
SSU72-204ENST00000378726 CEACAM21Q3KPI0 293 aa16.65■□□□□ 0.26
SSU72-204ENST00000378726 SPATA46Q5T0L3 261 aa16.65■□□□□ 0.26
SSU72-204ENST00000378726 HOGA1Q86XE5 327 aa16.65■□□□□ 0.26
SSU72-204ENST00000378726 OR4K15Q8NH41 348 aa16.65■□□□□ 0.26
SSU72-204ENST00000378726 RRNAD1Q96FB5 475 aaKnown RBP16.65■□□□□ 0.26
SSU72-204ENST00000378726 TSNAXQ99598 290 aaKnown RBP16.65■□□□□ 0.26
SSU72-204ENST00000378726 ADAT1Q9BUB4 502 aaKnown RBP16.65■□□□□ 0.26
SSU72-204ENST00000378726 PECRQ9BY49 303 aa16.65■□□□□ 0.26
SSU72-204ENST00000378726 DLL1O00548 723 aa16.65■□□□□ 0.26
SSU72-204ENST00000378726 SRSF3P84103 164 aaKnown RBP16.65■□□□□ 0.26
SSU72-204ENST00000378726 P2RY6Q15077 328 aa16.65■□□□□ 0.26
SSU72-204ENST00000378726 TMEM88Q6PEY1 159 aa16.65■□□□□ 0.26
SSU72-204ENST00000378726 BEND4Q6ZU67 534 aa16.65■□□□□ 0.26
SSU72-204ENST00000378726 Q8NA96 180 aa16.65■□□□□ 0.26
SSU72-204ENST00000378726 FAM57AQ8TBR7 257 aa16.65■□□□□ 0.26
SSU72-204ENST00000378726 HIST1H2AAQ96QV6 131 aa16.65■□□□□ 0.26
SSU72-204ENST00000378726 IFT22Q9H7X7 185 aa16.65■□□□□ 0.26
SSU72-204ENST00000378726 INTS1Q8N201 2190 aaKnown RBP16.64■□□□□ 0.26
SSU72-204ENST00000378726 BSNQ9UPA5 3926 aa16.64■□□□□ 0.25
SSU72-204ENST00000378726 PQLC2LA1A4F0 135 aa16.64■□□□□ 0.25
SSU72-204ENST00000378726 H0YIZ8 118 aa16.64■□□□□ 0.25
SSU72-204ENST00000378726 TIMP3P35625 211 aa16.64■□□□□ 0.25
SSU72-204ENST00000378726 TAF9Q16594 264 aa16.64■□□□□ 0.25
SSU72-204ENST00000378726 MICBQ29980 383 aa16.64■□□□□ 0.25
SSU72-204ENST00000378726 OR2T2Q6IF00 324 aa16.64■□□□□ 0.25
SSU72-204ENST00000378726 LDLRAD3Q86YD5 345 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms