RNA–Protein interactions for RNA: ENST00000366159.8

TNFRSF1A-202, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,339 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-202ENST00000366159 LIMS3P0CW19 117 aa11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 LIMS4P0CW20 117 aa11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 PRKACAP17612 351 aa11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 GABRR1P24046 479 aa11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 RAB13P51153 203 aa11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 ZP1P60852 638 aa11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 DEFA6Q01524 100 aa11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 MRPL28Q13084 256 aaKnown RBP11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 EDDM3AQ14507 147 aa11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 LPCAT4Q643R3 524 aa11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 Q6P435 159 aa11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 C11orf88Q6PI97 169 aa11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 Q8N2B8 174 aa11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 ZNF676Q8N7Q3 588 aa11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 OR52I1Q8NGK6 324 aa11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 OR13C9Q8NGT0 318 aa11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 RFT1Q96AA3 541 aa11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 FOXRED1Q96CU9 486 aaPredicted RBP11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 MYCBPQ99417 103 aaPredicted RBP11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 TCF19Q9Y242 345 aa11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 UBE2J1Q9Y385 318 aaPredicted RBP11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 SESN1Q9Y6P5 492 aa11.03□□□□□ -0.64
TNFRSF1A-202ENST00000366159 IGHV2-26A0A0B4J1V2 119 aa11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 A0A0G2JK05 382 aa11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 TMEM212A6NML5 194 aa11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 SH2D1BO14796 132 aa11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 WBP4O75554 376 aaKnown RBP11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 RPSAP08865 295 aaKnown RBP11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 P2RX3P56373 397 aa11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 HERPUD1Q15011 391 aa11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 CDK5R1Q15078 307 aa11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 MINOS1Q5TGZ0 78 aa11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 SERPINA12Q8IW75 414 aa11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 OR4C13Q8NGP0 309 aa11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 RPS4Y2Q8TD47 263 aa11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 WIPF2Q8TF74 440 aaPredicted RBP11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 MRPL48Q96GC5 212 aaKnown RBP11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 PDCD1LG2Q9BQ51 273 aa11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 TMEM133Q9H2Q1 129 aa11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 ZNF702PQ9H963 129 aa11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 FGF20Q9NP95 211 aaPredicted RBP11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 EXOSC4Q9NPD3 245 aaKnown RBP11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 GSTK1Q9Y2Q3 226 aa11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 RPL36Q9Y3U8 105 aaKnown RBP11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 MINOS1-NBL1R4GNA1 71 aa11.02□□□□□ -0.65
TNFRSF1A-202ENST00000366159 FAM90A22PA8MWA6 464 aa11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 SIRPB1O00241 398 aa11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 SULT1B1O43704 296 aa11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 CSN2P05814 226 aa11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 JUNBP17275 347 aaPredicted RBP11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 SNU13P55769 128 aaKnown RBP11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 KISS1Q15726 138 aa11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 SSX2Q16385 188 aa11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 SMN1Q16637 294 aaKnown RBP11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 PDLIM3Q53GG5 364 aaPredicted RBP11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 KLHL22Q53GT1 634 aa11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 Q8NFD4 153 aa11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 OR5D18Q8NGL1 313 aa11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 OR5D14Q8NGL3 314 aa11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 OR4P4Q8NGL7 312 aa11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 OR5AK2Q8NH90 309 aa11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 RGP1Q92546 391 aaPredicted RBP11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 RDH12Q96NR8 316 aa11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 NPFFR1Q9GZQ6 430 aa11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 SERTAD4Q9NUC0 356 aa11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 TAS2R3Q9NYW6 316 aa11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 GLS2Q9UI32 602 aa11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 FOXJ3Q9UPW0 622 aa11.01□□□□□ -0.65
TNFRSF1A-202ENST00000366159 SLC33A1O00400 549 aaPredicted RBP11□□□□□ -0.65
TNFRSF1A-202ENST00000366159 EBAG9O00559 213 aa11□□□□□ -0.65
TNFRSF1A-202ENST00000366159 CCDC159P0C7I6 412 aa11□□□□□ -0.65
TNFRSF1A-202ENST00000366159 CGB3P0DN86 165 aa11□□□□□ -0.65
TNFRSF1A-202ENST00000366159 CGB7P0DN87 165 aa11□□□□□ -0.65
TNFRSF1A-202ENST00000366159 GLIPR1P48060 266 aa11□□□□□ -0.65
TNFRSF1A-202ENST00000366159 GTF2A1P52655 376 aaPredicted RBP11□□□□□ -0.65
TNFRSF1A-202ENST00000366159 IL18R1Q13478 541 aa11□□□□□ -0.65
TNFRSF1A-202ENST00000366159 FAM189A2Q15884 450 aa11□□□□□ -0.65
TNFRSF1A-202ENST00000366159 XAF1Q6GPH4 301 aa11□□□□□ -0.65
TNFRSF1A-202ENST00000366159 ELP2Q6IA86 826 aa11□□□□□ -0.65
TNFRSF1A-202ENST00000366159 BAIAP2L2Q6UXY1 529 aa11□□□□□ -0.65
TNFRSF1A-202ENST00000366159 HEPN1Q6WQI6 88 aa11□□□□□ -0.65
TNFRSF1A-202ENST00000366159 CHST4Q8NCG5 386 aa11□□□□□ -0.65
TNFRSF1A-202ENST00000366159 OR2T6Q8NHC8 308 aa11□□□□□ -0.65
TNFRSF1A-202ENST00000366159 HAVCR2Q8TDQ0 301 aa11□□□□□ -0.65
TNFRSF1A-202ENST00000366159 COQ2Q96H96 371 aa11□□□□□ -0.65
TNFRSF1A-202ENST00000366159 CLEC7AQ9BXN2 247 aa11□□□□□ -0.65
TNFRSF1A-202ENST00000366159 DNAH3Q8TD57 4116 aa11□□□□□ -0.65
TNFRSF1A-202ENST00000366159 TET2Q6N021 2002 aaPredicted RBP10.99□□□□□ -0.65
TNFRSF1A-202ENST00000366159 IGLV1-47P01700 117 aa10.99□□□□□ -0.65
TNFRSF1A-202ENST00000366159 CD34P28906 385 aa10.99□□□□□ -0.65
TNFRSF1A-202ENST00000366159 GDNFP39905 211 aa10.99□□□□□ -0.65
TNFRSF1A-202ENST00000366159 GBX2P52951 348 aaPredicted RBP10.99□□□□□ -0.65
TNFRSF1A-202ENST00000366159 AESQ08117 197 aa10.99□□□□□ -0.65
TNFRSF1A-202ENST00000366159 DYNC1I2Q13409 638 aaKnown RBP10.99□□□□□ -0.65
TNFRSF1A-202ENST00000366159 C2orf68Q2NKX9 166 aa10.99□□□□□ -0.65
TNFRSF1A-202ENST00000366159 CCDC58Q4VC31 144 aa10.99□□□□□ -0.65
TNFRSF1A-202ENST00000366159 PLA1AQ53H76 456 aa10.99□□□□□ -0.65
TNFRSF1A-202ENST00000366159 ZNF691Q5VV52 312 aa10.99□□□□□ -0.65
TNFRSF1A-202ENST00000366159 ASCL4Q6XD76 172 aa10.99□□□□□ -0.65
TNFRSF1A-202ENST00000366159 KLHDC1Q8N7A1 406 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms