RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 HDHD3Q9BSH5 251 aaPredicted RBP1.94□□□□□ -2.1
VPS54-202ENST00000354504 SHARPINQ9H0F6 387 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 CST11Q9H112 138 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 SLA2Q9H6Q3 261 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 GPR84Q9NQS5 396 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 MRPL15Q9P015 296 aaKnown RBP1.94□□□□□ -2.1
VPS54-202ENST00000354504 ZNF629Q9UEG4 869 aaPredicted RBP1.94□□□□□ -2.1
VPS54-202ENST00000354504 TNFSF18Q9UNG2 199 aa1.94□□□□□ -2.1
VPS54-202ENST00000354504 FARSAQ9Y285 508 aaKnown RBP1.94□□□□□ -2.1
VPS54-202ENST00000354504 PTRH2Q9Y3E5 179 aaKnown RBP1.94□□□□□ -2.1
VPS54-202ENST00000354504 TRAV24A0A0B4J272 114 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 FAM172BPA6NC97 362 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 MSGN1A6NI15 193 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 SH2D7A6NKC9 451 aaPredicted RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 SNTNA6NMZ2 147 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 PRSS46E5RG02 174 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 NPIPB11E5RHQ5 1161 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 PHOX2AO14813 284 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 MPPED1O15442 326 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 KCNAB3O43448 404 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 B3GALNT1O75752 331 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 RPP14O95059 124 aaKnown RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 TMEM50AO95807 157 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 F10P00742 488 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 NGFP01138 241 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 SP1P08047 785 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 FGF2P09038 288 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 HIST1H1DP16402 221 aaKnown RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 IGHV1-2P23083 117 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 COL8A2P25067 703 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 RPL4P36578 427 aaKnown RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 COMPP49747 757 aaPredicted RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 UBE2MP61081 183 aaKnown RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 SKP1P63208 163 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 SLC35A1P78382 337 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 TFF3Q07654 80 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 FOXF2Q12947 444 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 SNTB2Q13425 540 aaKnown RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 SLC10A1Q14973 349 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 TRIP6Q15654 476 aaKnown RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 TMEM176BQ3YBM2 270 aaPredicted RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 PYDC2Q56P42 97 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 DMRTC1Q5HYR2 192 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 HES3Q5TGS1 186 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 TMEM268Q5VZI3 342 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 FJX1Q86VR8 437 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 RPS19BP1Q86WX3 136 aaKnown RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 OR8H2Q8N162 312 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 NEXN-AS1Q8NBZ9 246 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 DMBX1Q8NFW5 382 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 OR51S1Q8NGJ8 323 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 OR5M8Q8NGP6 311 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 OR10R2Q8NGX6 335 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 OR2AE1Q8NHA4 323 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 KCNE4Q8WWG9 221 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 APOBEC3DQ96AK3 386 aaPredicted RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 ZNF503Q96F45 646 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 OR10C1Q96KK4 312 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 SPACA5Q96QH8 159 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 SULT4A1Q9BR01 284 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 OR51J1Q9H342 316 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 OR51I2Q9H344 312 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 CRLF2Q9HC73 371 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 PAQR5Q9NXK6 330 aaPredicted RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 SLC39A1Q9NY26 324 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 COPS7AQ9UBW8 275 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 GSTK1Q9Y2Q3 226 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 AMDHD2Q9Y303 409 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 ACACBO00763 2458 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 ABCA4P78363 2273 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 A0A087X0M5 115 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 TMEM269A0A1B0GVZ9 245 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 A0A1B0GX30 115 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 C9orf170A2RU37 121 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 TMEM235A6NFC5 223 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 ARGFXA6NJG6 315 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 PMS2P5A8MQ11 134 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 KHDRBS3O75525 346 aaKnown RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 ARL6IP5O75915 188 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 C1QL1O75973 258 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 MT-CO3P00414 261 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 SLC2A1P11166 492 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 RPA2P15927 270 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 ZNF32P17041 273 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 MSR1P21757 451 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 PAICSP22234 425 aaKnown RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 UCP1P25874 307 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 BLVRAP53004 296 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 CLDN17P56750 224 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 PROK1P58294 105 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 RPP30P78346 268 aaKnown RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 MRPS10P82664 201 aaKnown RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 DHRS2Q13268 280 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 PPP1R1AQ13522 171 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 ZNF345Q14585 488 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 RAB35Q15286 201 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 KISS1Q15726 138 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 C3AR1Q16581 482 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 ODF4Q2M2E3 257 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 PDLIM3Q53GG5 364 aaPredicted RBP1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms