RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 NFAM1Q8NET5 270 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-202ENST00000347401 TINAGL1Q9GZM7 467 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-202ENST00000347401 MED13LQ71F56 2210 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 PQLC2LA1A4F0 135 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 OPRK1P41145 380 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 LEMD1Q68G75 181 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 TMEM179BQ7Z7N9 219 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 SIRT6Q8N6T7 355 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 UBTD1Q9HAC8 227 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 SIRT5Q9NXA8 310 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 C7orf77A4D0Y5 90 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 ZBTB42B2RXF5 422 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 DIRC3C9JPN6 131 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 GUSBP08236 651 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 CCR5P51681 352 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 KTI12Q96EK9 354 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-202ENST00000347401 HSD17B10Q99714 261 aaKnown RBP11.89□□□□□ -0.51
COL6A3-202ENST00000347401 IGLV3-27P01718 113 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 FREM1Q5H8C1 2179 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 ZNF716A6NP11 495 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 WNT1P04628 370 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 PRRX1P54821 245 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 ZNF385BQ569K4 471 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 FAM109BQ6ICB4 259 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-202ENST00000347401 OPN1LWP04000 364 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 PRSS1P07477 247 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 MOB3AQ96BX8 217 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 OR5AC2Q9NZP5 309 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 TRAV34A0A0B4J273 112 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 TRDCB7Z8K6 153 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 CEACAM3P40198 252 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 CLDN18P56856 261 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 PPIAP62937 165 aaKnown RBP11.88□□□□□ -0.51
COL6A3-202ENST00000347401 NTHL1P78549 312 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 FAM78BQ5VT40 261 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 IL22RA2Q969J5 263 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 MRPL37Q9BZE1 423 aaKnown RBP11.88□□□□□ -0.51
COL6A3-202ENST00000347401 TAF1LQ8IZX4 1826 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 CYB5R3P00387 301 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-202ENST00000347401 SEMG1P04279 462 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 DDTP30046 118 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 AVPR2P30518 371 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 CSNK1EP49674 416 aaKnown RBP11.88□□□□□ -0.51
COL6A3-202ENST00000347401 MMP16P51512 607 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 PLPPR5Q32ZL2 321 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 TMEM211Q6ICI0 200 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 PAQR6Q6TCH4 344 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 PARM1Q6UWI2 310 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 SHISA6Q6ZSJ9 500 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 ROS1P08922 2347 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 M0R296 226 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 CDC14BO60729 498 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 IGLV3-25P01717 112 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 SUCLG1P53597 346 aaKnown RBP11.88□□□□□ -0.51
COL6A3-202ENST00000347401 HYAL4Q2M3T9 481 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 D2HGDHQ8N465 521 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 ADAT3Q96EY9 351 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-202ENST00000347401 PIPOXQ9P0Z9 390 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 THADAQ6YHU6 1953 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 GOSR1O95249 250 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 FAAP20Q6NZ36 180 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 C16orf52Q8NHV5 167 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 RAB37Q96AX2 223 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 CACNG5Q9UF02 275 aa11.88□□□□□ -0.51
COL6A3-202ENST00000347401 C7orf66A4D0T2 115 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 GLULP15104 373 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 C21orf62-AS1Q17RA5 79 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 MRGPRX1Q96LB2 322 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 C1QTNF12Q5T7M4 302 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 ZNF383Q8NA42 475 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 CDX2Q99626 313 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-202ENST00000347401 GPR61Q9BZJ8 451 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 ELF5Q9UKW6 265 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-202ENST00000347401 EPPINO95925 133 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 HBZP02008 142 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 SLC37A1P57057 533 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 IZUMO4Q1ZYL8 232 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 UPK1AO00322 258 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 CRYBA1P05813 215 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 SLC35E4Q6ICL7 350 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 H3BQ15 152 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 CEBPDP49716 269 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-202ENST00000347401 PYCR3Q53H96 274 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 GPA33Q99795 319 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 IL36GQ9NZH8 169 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 THAP10Q9P2Z0 257 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-202ENST00000347401 STARD10Q9Y365 291 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 ZNF785A8K8V0 405 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 CD27P26842 260 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 METAP1P53582 386 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 TAS2R60P59551 318 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 NKAIN2Q5VXU1 208 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 RDH5Q92781 318 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 MRGPRX3Q96LB0 322 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 MMP25Q9NPA2 562 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 PLEKHB1Q9UF11 243 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-202ENST00000347401 BRCA1P38398 1863 aaKnown RBP11.87□□□□□ -0.51
COL6A3-202ENST00000347401 DSPPQ9NZW4 1301 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 MELTFP08582 738 aa11.87□□□□□ -0.51
COL6A3-202ENST00000347401 ZG16BQ96DA0 208 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms