RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 RDH5Q92781 318 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 TEX50A0A1B0GTY4 177 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 CDC34P49427 236 aaPredicted RBP9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 RLN3Q8WXF3 142 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 ACY3Q96HD9 319 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 P2RX4Q99571 388 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 METTL12A8MUP2 240 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 HAND1O96004 215 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 CD300CQ08708 224 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 RHBDD2Q6NTF9 364 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 CLEC18BQ6UXF7 455 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 OR13G1Q8NGZ3 307 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 USB1Q9BQ65 265 aaKnown RBP9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 AKAP6Q13023 2319 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 OR4C3Q8NH37 302 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 ADAT1Q9BUB4 502 aaKnown RBP9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 DOCK9Q9BZ29 2069 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 OOEPA6NGQ2 149 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 CYR61O00622 381 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 MT-ND6P03923 174 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 STAG3L2P0CL84 134 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 AQP10Q96PS8 301 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 SNCGO76070 127 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 OR4C5Q8NGB2 326 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 BCL2L2Q92843 193 aaPredicted RBP9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 GINS3Q9BRX5 216 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 PLXND1Q9Y4D7 1925 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 PI3P19957 117 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 EDDM3AQ14507 147 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 TOMM20LQ6UXN7 152 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 OR10V1Q8NGI7 309 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 PACRGQ96M98 296 aaPredicted RBP9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 NPDC1Q9NQX5 325 aaPredicted RBP9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 TMEM210A6NLX4 147 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 GEMIN2O14893 280 aaKnown RBP9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 BTNL3Q6UXE8 466 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 OR10D4PQ8NGN7 298 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 VPS25Q9BRG1 176 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 SIRPB1O00241 398 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 ENSAO43768 121 aaKnown RBP9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 NSUN5P2Q63ZY6 315 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 PARD6AQ9NPB6 346 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 OR3A4PP47883 348 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 LRRC10Q5BKY1 277 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 TRIM61Q5EBN2 209 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 LILRB1Q8NHL6 650 aaPredicted RBP9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 ROBO4Q8WZ75 1007 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 SPACA5Q96QH8 159 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 CACNG5Q9UF02 275 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 LANCL1O43813 399 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 NDUFB7P17568 137 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 SUCLG1P53597 346 aaKnown RBP9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 CEACAM16Q2WEN9 425 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 BET1LQ9NYM9 111 aa9.11□□□□□ -0.95
CCDC88A-202ENST00000336838 A0A1W2PNR3 127 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 CD8AP01732 235 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 CRYABP02511 175 aaKnown RBP9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 PDZD11Q5EBL8 140 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 BHLHE23Q8NDY6 225 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 LRRC3CA6NJW4 275 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 IL2RAP01589 272 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 PMS2P11Q13670 270 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 MESTQ5EB52 335 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 LRRTM1Q86UE6 522 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 R3HDMLQ9H3Y0 253 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 CXorf1O96002 111 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 GCGP01275 180 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 SLC37A1P57057 533 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 SMAD2Q15796 467 aaKnown RBP9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 BSXQ3C1V8 233 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 FAM209AQ5JX71 171 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 C19orf48Q6RUI8 117 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 SLC36A1Q7Z2H8 476 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 OR8B12Q8NGG6 310 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 AKR7LQ8NHP1 331 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 CMBLQ96DG6 245 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 OR10C1Q96KK4 312 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 MOGAT1Q96PD6 335 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 HSF4Q9ULV5 492 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 A0A087X0M5 115 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 A0A1B0GX30 115 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 PSG6Q00889 435 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 PTCRAQ6ISU1 281 aaPredicted RBP9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 ZNF343Q6P1L6 599 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 YRDCQ86U90 279 aaKnown RBP9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 ABCA7Q8IZY2 2146 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 NPAS1Q99742 590 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 TMEM131Q92545 1883 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 FAM90A26D6RGX4 464 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 GCSHP23434 173 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 C9orf135Q5VTT2 229 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 FBXO4Q9UKT5 387 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 CTXND1A0A1B0GTU2 59 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 OR5H15A6NDH6 313 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 OR5H1A6NKK0 313 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 PHOX2AO14813 284 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 ORM1P02763 201 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 NMBP08949 121 aa9.1□□□□□ -0.95
CCDC88A-202ENST00000336838 AMMECR1Q9Y4X0 333 aaPredicted RBP9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms