RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 GDNFP39905 211 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 ZNF81P51508 661 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 CCR6P51684 374 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 SNRPD2P62316 118 aaKnown RBP8.53□□□□□ -1.04
HMGB3-201ENST00000325307 BTG1P62324 171 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 UNC119Q13432 240 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 HACD4Q5VWC8 232 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 MEX3BQ6ZN04 569 aaKnown RBP8.53□□□□□ -1.04
HMGB3-201ENST00000325307 OVCH2Q7RTZ1 564 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 OR52I2Q8NH67 350 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 KLK11Q9UBX7 282 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 HCFC1P51610 2035 aa8.52□□□□□ -1.04
HMGB3-201ENST00000325307 CDC14BO60729 498 aa8.52□□□□□ -1.04
HMGB3-201ENST00000325307 MGMTP16455 207 aa8.52□□□□□ -1.04
HMGB3-201ENST00000325307 INPP1P49441 399 aa8.52□□□□□ -1.04
HMGB3-201ENST00000325307 GMFBP60983 142 aa8.52□□□□□ -1.04
HMGB3-201ENST00000325307 MZT1Q08AG7 82 aa8.52□□□□□ -1.04
HMGB3-201ENST00000325307 BAIAP2L2Q6UXY1 529 aa8.52□□□□□ -1.04
HMGB3-201ENST00000325307 MKXQ8IYA7 352 aa8.52□□□□□ -1.04
HMGB3-201ENST00000325307 TOMM5Q8N4H5 51 aa8.52□□□□□ -1.04
HMGB3-201ENST00000325307 CHST4Q8NCG5 386 aa8.52□□□□□ -1.04
HMGB3-201ENST00000325307 OR51T1Q8NGJ9 327 aa8.52□□□□□ -1.04
HMGB3-201ENST00000325307 FAM222BQ8WU58 562 aa8.52□□□□□ -1.04
HMGB3-201ENST00000325307 URM1Q9BTM9 101 aaKnown RBP8.52□□□□□ -1.04
HMGB3-201ENST00000325307 SELENOIQ9C0D9 397 aa8.52□□□□□ -1.04
HMGB3-201ENST00000325307 DYNLRB1Q9NP97 96 aa8.52□□□□□ -1.04
HMGB3-201ENST00000325307 FLNCQ14315 2725 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 hCG_1807616A0A1W2PRN6 198 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 LRP5LA4QPB2 252 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 TRAPPC2LH3BP13 241 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 SYNGR1O43759 233 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 CTAG2O75638 210 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 FABP1P07148 127 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 SNU13P55769 128 aaKnown RBP8.52□□□□□ -1.05
HMGB3-201ENST00000325307 PITPNAQ00169 270 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 FAM76BQ5HYJ3 339 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 OR2W3Q7Z3T1 314 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 COMMD7Q86VX2 200 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 OR51I2Q9H344 312 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 NUDT15Q9NV35 164 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 IGKV1-12A0A0C4DH73 117 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 TMEM14DPA8MWL7 114 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 CDIPTO14735 213 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 LDLRAD4O15165 306 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 IGKV1D-12P01611 117 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 GTF2F2P13984 249 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 RAB6AP20340 208 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 TNFSF4P23510 183 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 GIFP27352 417 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 APOBEC3AP31941 199 aaPredicted RBP8.52□□□□□ -1.05
HMGB3-201ENST00000325307 MNDAP41218 407 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 VEGFCP49767 419 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 MEOX2P50222 304 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 ZNF154Q13106 437 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 PRAMEF6Q5VXH4 476 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 PRR18Q8N4B5 295 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 SCCPDHQ8NBX0 429 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 C1orf147Q96MC9 270 aaPredicted RBP8.52□□□□□ -1.05
HMGB3-201ENST00000325307 PCDHB16Q9NRJ7 776 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 GLS2Q9UI32 602 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 KIF25Q9UIL4 384 aa8.52□□□□□ -1.05
HMGB3-201ENST00000325307 TRAV18A0A075B6X5 111 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 C7orf66A4D0T2 115 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 TMEM210A6NLX4 147 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 INMT-MINDY4F8WBC2 141 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 I3L521 148 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 J3QT63 122 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 M0R233 179 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 TCRBP04435 133 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 TAS2R20P59543 309 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 QRFPP83859 136 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 WDR86Q86TI4 376 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 ZSCAN4Q8NAM6 433 aaPredicted RBP8.51□□□□□ -1.05
HMGB3-201ENST00000325307 PXT1Q8NFP0 134 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 USP9XQ93008 2570 aaPredicted RBP8.51□□□□□ -1.05
HMGB3-201ENST00000325307 GABARAPH6UMI1 98 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 SFTPBP07988 381 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 BCL3P20749 454 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 GABRR1P24046 479 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 NPBWR2P48146 333 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 ZNF672Q499Z4 452 aaPredicted RBP8.51□□□□□ -1.05
HMGB3-201ENST00000325307 PTX4Q96A99 478 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 ZNF488Q96MN9 340 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 OR2V2Q96R30 315 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 NICN1Q9BSH3 213 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 MCUBQ9NWR8 336 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 POLDIP2Q9Y2S7 368 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 DOPEY1Q5JWR5 2465 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 MFSD2BA6NFX1 497 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 RHBDL1O75783 438 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 TNFAIP6P98066 277 aaPredicted RBP8.51□□□□□ -1.05
HMGB3-201ENST00000325307 FAAP20Q6NZ36 180 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 FBXL14Q8N1E6 418 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 AQP3Q92482 292 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 RBPMSQ93062 196 aaKnown RBP8.51□□□□□ -1.05
HMGB3-201ENST00000325307 ZMAT3Q9HA38 289 aaKnown RBP8.51□□□□□ -1.05
HMGB3-201ENST00000325307 GSN-AS1Q9NRJ2 163 aa8.51□□□□□ -1.05
HMGB3-201ENST00000325307 XRCC3O43542 346 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 DYRK1AQ13627 763 aa8.5□□□□□ -1.05
HMGB3-201ENST00000325307 MPPED2Q15777 294 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms