RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 TAAR6Q96RI8 345 aa17.01■□□□□ 0.31
USP48-201ENST00000308271 LANCL2Q9NS86 450 aa17.01■□□□□ 0.31
USP48-201ENST00000308271 LYRM2Q9NU23 88 aaPredicted RBP17.01■□□□□ 0.31
USP48-201ENST00000308271 ZNF638Q14966 1978 aaKnown RBP17.01■□□□□ 0.31
USP48-201ENST00000308271 ANK1P16157 1881 aa17.01■□□□□ 0.31
USP48-201ENST00000308271 A0A096LPE4 126 aa17.01■□□□□ 0.31
USP48-201ENST00000308271 A0A1W2PPZ6 126 aa17.01■□□□□ 0.31
USP48-201ENST00000308271 POU2F2P09086 479 aa17.01■□□□□ 0.31
USP48-201ENST00000308271 GPM6AP51674 278 aa17.01■□□□□ 0.31
USP48-201ENST00000308271 DMRT1Q9Y5R6 373 aa17.01■□□□□ 0.31
USP48-201ENST00000308271 OR8B8Q15620 311 aa17.01■□□□□ 0.31
USP48-201ENST00000308271 FAM162BQ5T6X4 162 aa17.01■□□□□ 0.31
USP48-201ENST00000308271 MRGPRGQ86SM5 289 aa17.01■□□□□ 0.31
USP48-201ENST00000308271 RBMXL3Q8N7X1 1067 aaKnown RBP17.01■□□□□ 0.31
USP48-201ENST00000308271 NYNRINQ9P2P1 1898 aaKnown RBP17■□□□□ 0.31
USP48-201ENST00000308271 IGLV1-36A0A0B4J1U3 117 aa17■□□□□ 0.31
USP48-201ENST00000308271 COL9A1P20849 921 aa17■□□□□ 0.31
USP48-201ENST00000308271 ERVS71-1P61550 626 aa17■□□□□ 0.31
USP48-201ENST00000308271 MPV17LQ2QL34 196 aa17■□□□□ 0.31
USP48-201ENST00000308271 ZNF774Q6NX45 483 aa17■□□□□ 0.31
USP48-201ENST00000308271 CARFQ8N187 725 aa17■□□□□ 0.31
USP48-201ENST00000308271 ANAPC16Q96DE5 110 aa17■□□□□ 0.31
USP48-201ENST00000308271 ANKRD36A6QL64 1941 aa17■□□□□ 0.31
USP48-201ENST00000308271 FOXS1O43638 330 aa17■□□□□ 0.31
USP48-201ENST00000308271 SMIM10L1P0DMW3 83 aa17■□□□□ 0.31
USP48-201ENST00000308271 ZNF17P17021 662 aa17■□□□□ 0.31
USP48-201ENST00000308271 TLE1Q04724 770 aa17■□□□□ 0.31
USP48-201ENST00000308271 ATP6V1FQ16864 119 aa17■□□□□ 0.31
USP48-201ENST00000308271 SMIM10Q96HG1 83 aa17■□□□□ 0.31
USP48-201ENST00000308271 OR10C1Q96KK4 312 aa17■□□□□ 0.31
USP48-201ENST00000308271 PLA2G2FQ9BZM2 168 aa17■□□□□ 0.31
USP48-201ENST00000308271 CHST5Q9GZS9 411 aa17■□□□□ 0.31
USP48-201ENST00000308271 NKX2-6A6NCS4 301 aa17■□□□□ 0.31
USP48-201ENST00000308271 SYNGR2O43760 224 aa17■□□□□ 0.31
USP48-201ENST00000308271 KRASP01116 189 aa17■□□□□ 0.31
USP48-201ENST00000308271 SELEP16581 610 aa17■□□□□ 0.31
USP48-201ENST00000308271 ZNF32P17041 273 aa17■□□□□ 0.31
USP48-201ENST00000308271 GPR12P47775 334 aa17■□□□□ 0.31
USP48-201ENST00000308271 OR8G1Q15617 311 aa17■□□□□ 0.31
USP48-201ENST00000308271 DPPA3Q6W0C5 159 aa17■□□□□ 0.31
USP48-201ENST00000308271 C16orf47Q6ZP98 133 aaPredicted RBP17■□□□□ 0.31
USP48-201ENST00000308271 CTHRC1Q96CG8 243 aa17■□□□□ 0.31
USP48-201ENST00000308271 NUDT16L1Q9BRJ7 211 aaKnown RBP17■□□□□ 0.31
USP48-201ENST00000308271 PISDQ9UG56 409 aa17■□□□□ 0.31
USP48-201ENST00000308271 ZIC2O95409 532 aaPredicted RBP16.99■□□□□ 0.31
USP48-201ENST00000308271 CELA2BP08218 269 aaPredicted RBP16.99■□□□□ 0.31
USP48-201ENST00000308271 MGAT2Q10469 447 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 RNF151Q2KHN1 245 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 RPH3ALQ9UNE2 315 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 CHRNA7P36544 502 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 EDDM3BP56851 147 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 RPS4XP62701 263 aaKnown RBP16.99■□□□□ 0.31
USP48-201ENST00000308271 ZP4Q12836 540 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 ZNF154Q13106 437 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 ANKRD55Q3KP44 614 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 KDF1Q8NAX2 398 aaPredicted RBP16.99■□□□□ 0.31
USP48-201ENST00000308271 LRRC3BQ96PB8 259 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 CTNNBIP1Q9NSA3 81 aaPredicted RBP16.99■□□□□ 0.31
USP48-201ENST00000308271 IL9P15248 144 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 HNRNPA3P51991 378 aaKnown RBP16.99■□□□□ 0.31
USP48-201ENST00000308271 NHLH2Q02577 135 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 OR2V1Q8NHB1 315 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 KNTC1P50748 2209 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 TRDCB7Z8K6 153 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 M0QZK8 103 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 GGCTO75223 188 aaKnown RBP16.99■□□□□ 0.31
USP48-201ENST00000308271 MMP7P09237 267 aaPredicted RBP16.99■□□□□ 0.31
USP48-201ENST00000308271 GNG3P63215 75 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 TMEM211Q6ICI0 200 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 ABHD5Q8WTS1 349 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 GALMQ96C23 342 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 C5orf66Q9H5L9 145 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 SLC25A22Q9H936 323 aa16.99■□□□□ 0.31
USP48-201ENST00000308271 PITX3O75364 302 aa16.98■□□□□ 0.31
USP48-201ENST00000308271 FOXO1Q12778 655 aa16.98■□□□□ 0.31
USP48-201ENST00000308271 C17orf78Q8N4C9 275 aa16.98■□□□□ 0.31
USP48-201ENST00000308271 OR10V1Q8NGI7 309 aa16.98■□□□□ 0.31
USP48-201ENST00000308271 CACNA1IQ9P0X4 2223 aa16.98■□□□□ 0.31
USP48-201ENST00000308271 J3QRE1 110 aa16.98■□□□□ 0.31
USP48-201ENST00000308271 HOXB1P14653 301 aaPredicted RBP16.98■□□□□ 0.31
USP48-201ENST00000308271 CDX1P47902 265 aaPredicted RBP16.98■□□□□ 0.31
USP48-201ENST00000308271 MESP2Q0VG99 397 aa16.98■□□□□ 0.31
USP48-201ENST00000308271 OR10G4Q8NGN3 311 aa16.98■□□□□ 0.31
USP48-201ENST00000308271 OR10G9Q8NGN4 311 aa16.98■□□□□ 0.31
USP48-201ENST00000308271 OR10G7Q8NGN6 311 aa16.98■□□□□ 0.31
USP48-201ENST00000308271 NOL4LQ96MY1 436 aaPredicted RBP16.98■□□□□ 0.31
USP48-201ENST00000308271 MANBALQ9NQG1 85 aa16.98■□□□□ 0.31
USP48-201ENST00000308271 SIP14410 1827 aa16.98■□□□□ 0.31
USP48-201ENST00000308271 GEMIN2O14893 280 aaKnown RBP16.98■□□□□ 0.31
USP48-201ENST00000308271 CYB561D1Q8N8Q1 229 aa16.98■□□□□ 0.31
USP48-201ENST00000308271 M1APQ8TC57 530 aa16.98■□□□□ 0.31
USP48-201ENST00000308271 RNF222A6NCQ9 220 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 METTL12A8MUP2 240 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 NPIPB9F8W1W9 429 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 VAMP3Q15836 100 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 TEX30Q5JUR7 227 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 FAM78BQ5VT40 261 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 RHBDD1Q8TEB9 315 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 EDARADDQ8WWZ3 215 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 VPS25Q9BRG1 176 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms