RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 A0A1B0GU03 582 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 A0A1B0GW64 132 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 MUC22E2RYF6 1773 aaPredicted RBP11.74□□□□□ -0.53
SKA3-201ENST00000298260 IL33O95760 270 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 FCGR2AP12318 317 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 FAHP16930 419 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 HERPUD1Q15011 391 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 TDRG1Q3Y452 100 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 ZNF506Q5JVG8 444 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 GPR157Q5UAW9 335 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 RTL6Q6ICC9 239 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 PTPMT1Q8WUK0 201 aaPredicted RBP11.74□□□□□ -0.53
SKA3-201ENST00000298260 TBL1XR1Q9BZK7 514 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 ACTR3CQ9C0K3 210 aaPredicted RBP11.74□□□□□ -0.53
SKA3-201ENST00000298260 MTIF3Q9H2K0 278 aaKnown RBP11.74□□□□□ -0.53
SKA3-201ENST00000298260 SLC2A9Q9NRM0 540 aa11.74□□□□□ -0.53
SKA3-201ENST00000298260 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.73□□□□□ -0.53
SKA3-201ENST00000298260 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.73□□□□□ -0.53
SKA3-201ENST00000298260 FAM230AA0A1W2PPH8 454 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 M0R143 59 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 ZNF43P17038 809 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 TFPI2P48307 235 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 DLX2Q07687 328 aaPredicted RBP11.73□□□□□ -0.53
SKA3-201ENST00000298260 C1orf61Q13536 156 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 GNMTQ14749 295 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 SLC35E3Q7Z769 313 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 CALHM1Q8IU99 346 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 LGI3Q8N145 548 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 OR10A7Q8NGE5 316 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.73□□□□□ -0.53
SKA3-201ENST00000298260 ASB10Q8WXI3 467 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 FBRSQ9HAH7 460 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 CDH20Q9HBT6 801 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 LRFN1Q9P244 771 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 FBLN5Q9UBX5 448 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 LHFPL6Q9Y693 200 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 A0A0J9YY10 115 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 DLEU1O43261 78 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 DFFBO76075 338 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 HSPB1P04792 205 aaKnown RBP11.73□□□□□ -0.53
SKA3-201ENST00000298260 SFTPDP35247 375 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 GNG10P50151 68 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 ADIRFQ15847 76 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 C1orf189Q5VU69 101 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 SSX7Q7RTT5 188 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 ODF3L1Q8IXM7 274 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 ARHGEF39Q8N4T4 335 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 ZNF248Q8NDW4 579 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 RCC1LQ96I51 464 aaKnown RBP11.73□□□□□ -0.53
SKA3-201ENST00000298260 GPR173Q9NS66 373 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 ANXA10Q9UJ72 324 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 PPIAL4AQ9Y536 164 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 CELSR3Q9NYQ7 3312 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 CA11O75493 328 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 FGF5P12034 268 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 SELEP16581 610 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 DUSP1P28562 367 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 IL12BP29460 328 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 AKT2P31751 481 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 CD81P60033 236 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 DNLZQ5SXM8 178 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 OR5T1Q8NG75 326 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 NAT6Q93015 286 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 MSI2Q96DH6 328 aaKnown RBP11.73□□□□□ -0.53
SKA3-201ENST00000298260 KCNK17Q96T54 332 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 PCGF1Q9BSM1 259 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 RSG1Q9BU20 258 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 RPP25Q9BUL9 199 aaKnown RBP11.73□□□□□ -0.53
SKA3-201ENST00000298260 FUT9Q9Y231 359 aa11.73□□□□□ -0.53
SKA3-201ENST00000298260 HMGB3O15347 200 aaKnown RBP11.72□□□□□ -0.53
SKA3-201ENST00000298260 SPRY1O43609 319 aaPredicted RBP11.72□□□□□ -0.53
SKA3-201ENST00000298260 NPIPB7O75200 414 aa11.72□□□□□ -0.53
SKA3-201ENST00000298260 LIAT1Q6ZQX7 453 aa11.72□□□□□ -0.53
SKA3-201ENST00000298260 PRR18Q8N4B5 295 aa11.72□□□□□ -0.53
SKA3-201ENST00000298260 ADGRG7Q96K78 797 aa11.72□□□□□ -0.53
SKA3-201ENST00000298260 CBY1Q9Y3M2 126 aa11.72□□□□□ -0.53
SKA3-201ENST00000298260 ZNF407Q9C0G0 2248 aa11.72□□□□□ -0.53
SKA3-201ENST00000298260 A0A1W2PPQ1 181 aa11.72□□□□□ -0.53
SKA3-201ENST00000298260 A6NCN8 305 aa11.72□□□□□ -0.53
SKA3-201ENST00000298260 OR1D4P47884 311 aa11.72□□□□□ -0.53
SKA3-201ENST00000298260 MRPS34P82930 218 aaKnown RBP11.72□□□□□ -0.53
SKA3-201ENST00000298260 ABLIM2Q6H8Q1 611 aa11.72□□□□□ -0.53
SKA3-201ENST00000298260 FAM89BQ8N5H3 189 aa11.72□□□□□ -0.53
SKA3-201ENST00000298260 TMEM252Q8N6L7 170 aa11.72□□□□□ -0.53
SKA3-201ENST00000298260 ZNF283Q8N7M2 679 aa11.72□□□□□ -0.53
SKA3-201ENST00000298260 THAP3Q8WTV1 239 aaPredicted RBP11.72□□□□□ -0.53
SKA3-201ENST00000298260 C18orf12Q96KH6 178 aa11.72□□□□□ -0.53
SKA3-201ENST00000298260 PPP1R14DQ9NXH3 145 aa11.72□□□□□ -0.53
SKA3-201ENST00000298260 POLR3KQ9Y2Y1 108 aaPredicted RBP11.72□□□□□ -0.53
SKA3-201ENST00000298260 FRYQ5TBA9 3013 aa11.71□□□□□ -0.53
SKA3-201ENST00000298260 FAM221BA6H8Z2 402 aa11.71□□□□□ -0.53
SKA3-201ENST00000298260 FOXI3A8MTJ6 420 aaPredicted RBP11.71□□□□□ -0.53
SKA3-201ENST00000298260 CYB5R3P00387 301 aaPredicted RBP11.71□□□□□ -0.53
SKA3-201ENST00000298260 IRF2P14316 349 aa11.71□□□□□ -0.53
SKA3-201ENST00000298260 IDH3GP51553 393 aaPredicted RBP11.71□□□□□ -0.53
SKA3-201ENST00000298260 POLR2HP52434 150 aaKnown RBP11.71□□□□□ -0.53
SKA3-201ENST00000298260 MLF1P58340 268 aa11.71□□□□□ -0.53
SKA3-201ENST00000298260 H3F3AP84243 136 aa11.71□□□□□ -0.53
SKA3-201ENST00000298260 PPA1Q15181 289 aa11.71□□□□□ -0.53
SKA3-201ENST00000298260 C16orf82Q7Z2V1 217 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms