RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 DAZAP1Q96EP5 407 aaKnown RBP13.54□□□□□ -0.24
SHH-201ENST00000297261 OXGR1Q96P68 337 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 IP6K3Q96PC2 410 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 ZNF331Q9NQX6 463 aaPredicted RBP13.54□□□□□ -0.24
SHH-201ENST00000297261 DOK5Q9P104 306 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 NOSIPQ9Y314 301 aaKnown RBP13.54□□□□□ -0.24
SHH-201ENST00000297261 OPN1MWP04001 364 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 OPN1MW2P0DN77 364 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 OPN1MW3P0DN78 364 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 HAAOP46952 286 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 NHLH2Q02577 135 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 MYBPHQ13203 477 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 ACOT6Q3I5F7 207 aaPredicted RBP13.54□□□□□ -0.24
SHH-201ENST00000297261 WDR74Q6RFH5 385 aaPredicted RBP13.54□□□□□ -0.24
SHH-201ENST00000297261 CATSPERDQ86XM0 798 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 PPP1R35Q8TAP8 253 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 ADAT3Q96EY9 351 aaPredicted RBP13.54□□□□□ -0.24
SHH-201ENST00000297261 BSCL2Q96G97 398 aaPredicted RBP13.54□□□□□ -0.24
SHH-201ENST00000297261 ZNF107Q9UII5 783 aaPredicted RBP13.54□□□□□ -0.24
SHH-201ENST00000297261 SPINK4O60575 86 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 ISXQ2M1V0 245 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 DHRS7BQ6IAN0 325 aaPredicted RBP13.54□□□□□ -0.24
SHH-201ENST00000297261 ADGRG7Q96K78 797 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 CTDSP1Q9GZU7 261 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 WDR13Q9H1Z4 485 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 ANXA10Q9UJ72 324 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 HEATR5BQ9P2D3 2071 aa13.54□□□□□ -0.24
SHH-201ENST00000297261 TMEM229AB2RXF0 380 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 UPK3AO75631 287 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 SEC11BP0C7V7 166 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 FUT3P21217 361 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 THBS4P35443 961 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 RHBDD2Q6NTF9 364 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 RPS19BP1Q86WX3 136 aaKnown RBP13.53□□□□□ -0.24
SHH-201ENST00000297261 GCNT2Q8N0V5 402 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 EXTL1Q92935 676 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 PNPP00491 289 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 MPLP40238 635 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 FABP6P51161 128 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 FUT7Q11130 342 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 OR10A7Q8NGE5 316 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 PLPP3O14495 311 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 CTSDP07339 412 aaPredicted RBP13.53□□□□□ -0.24
SHH-201ENST00000297261 CT45A8P0DMV1 189 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 CT45A9P0DMV2 189 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 B4GALT1P15291 398 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 PMCHP20382 165 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 GABRA2P47869 451 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 BSXQ3C1V8 233 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 CT45A2Q5DJT8 189 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 PMS2CLQ68D20 193 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 UNQ9370/PRO34162Q6UXP9 181 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 HIPK2Q9H2X6 1198 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 SLC25A22Q9H936 323 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 KCNE5Q9UJ90 142 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 C3orf85A0A1B0GTC6 90 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 PGA3P0DJD8 388 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 DYNLT3P51808 116 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 GGTLC2Q14390 218 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 ETV3LQ6ZN32 361 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 ZNF600Q6ZNG1 722 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 LHFPL2Q6ZUX7 228 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 SLC36A1Q7Z2H8 476 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 YRDCQ86U90 279 aaKnown RBP13.53□□□□□ -0.24
SHH-201ENST00000297261 CYB561D1Q8N8Q1 229 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 PTPMT1Q8WUK0 201 aaPredicted RBP13.53□□□□□ -0.24
SHH-201ENST00000297261 DNASE2BQ8WZ79 361 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 SLC25A28Q96A46 364 aa13.53□□□□□ -0.24
SHH-201ENST00000297261 KRASP01116 189 aa13.52□□□□□ -0.24
SHH-201ENST00000297261 ATP6V0CP27449 155 aa13.52□□□□□ -0.24
SHH-201ENST00000297261 TPPP2P59282 170 aa13.52□□□□□ -0.24
SHH-201ENST00000297261 ZNF385CQ66K41 422 aaPredicted RBP13.52□□□□□ -0.24
SHH-201ENST00000297261 PECRQ9BY49 303 aa13.52□□□□□ -0.24
SHH-201ENST00000297261 MTCH1Q9NZJ7 389 aa13.52□□□□□ -0.24
SHH-201ENST00000297261 MED12Q93074 2177 aa13.52□□□□□ -0.24
SHH-201ENST00000297261 LRP5LA4QPB2 252 aa13.52□□□□□ -0.25
SHH-201ENST00000297261 THY1P04216 161 aa13.52□□□□□ -0.25
SHH-201ENST00000297261 GRPP07492 148 aa13.52□□□□□ -0.25
SHH-201ENST00000297261 HNRNPA3P51991 378 aaKnown RBP13.52□□□□□ -0.25
SHH-201ENST00000297261 TGFBR3Q03167 851 aa13.52□□□□□ -0.25
SHH-201ENST00000297261 EXT1Q16394 746 aa13.52□□□□□ -0.25
SHH-201ENST00000297261 DRAM2Q6UX65 266 aa13.52□□□□□ -0.25
SHH-201ENST00000297261 OR8B12Q8NGG6 310 aa13.52□□□□□ -0.25
SHH-201ENST00000297261 ERGIC1Q969X5 290 aa13.52□□□□□ -0.25
SHH-201ENST00000297261 ALKBH3Q96Q83 286 aaPredicted RBP13.52□□□□□ -0.25
SHH-201ENST00000297261 LOXL2Q9Y4K0 774 aa13.52□□□□□ -0.25
SHH-201ENST00000297261 NPTNQ9Y639 398 aa13.52□□□□□ -0.25
SHH-201ENST00000297261 KIF26BQ2KJY2 2108 aa13.52□□□□□ -0.25
SHH-201ENST00000297261 TRBV5-5A0A0J9YX44 114 aa13.52□□□□□ -0.25
SHH-201ENST00000297261 VAMP5O95183 116 aa13.52□□□□□ -0.25
SHH-201ENST00000297261 NGFRP08138 427 aa13.52□□□□□ -0.25
SHH-201ENST00000297261 KLK2P20151 261 aa13.52□□□□□ -0.25
SHH-201ENST00000297261 EDDM3AQ14507 147 aa13.52□□□□□ -0.25
SHH-201ENST00000297261 NOXO1Q8NFA2 376 aa13.52□□□□□ -0.25
SHH-201ENST00000297261 APOBEC4Q8WW27 367 aaKnown RBP13.52□□□□□ -0.25
SHH-201ENST00000297261 OR10C1Q96KK4 312 aa13.52□□□□□ -0.25
SHH-201ENST00000297261 GGACTQ9BVM4 153 aa13.52□□□□□ -0.25
SHH-201ENST00000297261 CXorf65A6NEN9 183 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 ZNF814B7Z6K7 855 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 ZNF737O75373 536 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms