RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 FAM219AQ8IW50 185 aa20.56■□□□□ 0.88
TRIM54-201ENST00000296098 RTN4IP1Q8WWV3 396 aaPredicted RBP20.56■□□□□ 0.88
TRIM54-201ENST00000296098 SHARPINQ9H0F6 387 aa20.56■□□□□ 0.88
TRIM54-201ENST00000296098 MTCH1Q9NZJ7 389 aa20.56■□□□□ 0.88
TRIM54-201ENST00000296098 NKX2-8O15522 239 aa20.56■□□□□ 0.88
TRIM54-201ENST00000296098 HERV-K104P61576 105 aa20.56■□□□□ 0.88
TRIM54-201ENST00000296098 TFAP2EQ6VUC0 442 aa20.56■□□□□ 0.88
TRIM54-201ENST00000296098 P4HA3Q7Z4N8 544 aa20.56■□□□□ 0.88
TRIM54-201ENST00000296098 SLC38A6Q8IZM9 456 aa20.56■□□□□ 0.88
TRIM54-201ENST00000296098 SLC30A7Q8NEW0 376 aa20.56■□□□□ 0.88
TRIM54-201ENST00000296098 OR5P3Q8WZ94 311 aa20.56■□□□□ 0.88
TRIM54-201ENST00000296098 GALNT14Q96FL9 552 aa20.56■□□□□ 0.88
TRIM54-201ENST00000296098 GMPPAQ96IJ6 420 aaPredicted RBP20.56■□□□□ 0.88
TRIM54-201ENST00000296098 CYTL1Q9NRR1 136 aa20.56■□□□□ 0.88
TRIM54-201ENST00000296098 M6PRP20645 277 aa20.55■□□□□ 0.88
TRIM54-201ENST00000296098 UCP3P55916 312 aa20.55■□□□□ 0.88
TRIM54-201ENST00000296098 MPV17LQ2QL34 196 aa20.55■□□□□ 0.88
TRIM54-201ENST00000296098 GGNBP1Q5YKI7 109 aa20.55■□□□□ 0.88
TRIM54-201ENST00000296098 OR5L1Q8NGL2 311 aa20.55■□□□□ 0.88
TRIM54-201ENST00000296098 MRPL24Q96A35 216 aaKnown RBP20.55■□□□□ 0.88
TRIM54-201ENST00000296098 DNTTIP1Q9H147 329 aa20.55■□□□□ 0.88
TRIM54-201ENST00000296098 OR51B6Q9H340 312 aa20.55■□□□□ 0.88
TRIM54-201ENST00000296098 SLC2A9Q9NRM0 540 aa20.55■□□□□ 0.88
TRIM54-201ENST00000296098 RCC2Q9P258 522 aaKnown RBP20.55■□□□□ 0.88
TRIM54-201ENST00000296098 MPC1Q9Y5U8 109 aa20.55■□□□□ 0.88
TRIM54-201ENST00000296098 LGALS8O00214 317 aa20.54■□□□□ 0.88
TRIM54-201ENST00000296098 OR5AC1P0C628 307 aa20.54■□□□□ 0.88
TRIM54-201ENST00000296098 SRSF6Q13247 344 aaKnown RBP20.54■□□□□ 0.88
TRIM54-201ENST00000296098 TMEM187Q14656 261 aa20.54■□□□□ 0.88
TRIM54-201ENST00000296098 PHLDA2Q53GA4 152 aa20.54■□□□□ 0.88
TRIM54-201ENST00000296098 Q6ZS49 121 aa20.54■□□□□ 0.88
TRIM54-201ENST00000296098 HS3ST6Q96QI5 342 aa20.54■□□□□ 0.88
TRIM54-201ENST00000296098 ASCL3Q9NQ33 180 aa20.54■□□□□ 0.88
TRIM54-201ENST00000296098 FAM86C1Q9NVL1 165 aa20.54■□□□□ 0.88
TRIM54-201ENST00000296098 AADACP22760 399 aa20.54■□□□□ 0.88
TRIM54-201ENST00000296098 BAP18Q8IXM2 172 aa20.54■□□□□ 0.88
TRIM54-201ENST00000296098 CNTNAP3BQ96NU0 1288 aa20.54■□□□□ 0.88
TRIM54-201ENST00000296098 SUCNR1Q9BXA5 334 aa20.54■□□□□ 0.88
TRIM54-201ENST00000296098 CNTNAP3Q9BZ76 1288 aa20.54■□□□□ 0.88
TRIM54-201ENST00000296098 IL36RNQ9UBH0 155 aa20.54■□□□□ 0.88
TRIM54-201ENST00000296098 TUBD1Q9UJT1 453 aa20.54■□□□□ 0.88
TRIM54-201ENST00000296098 OR5B21A6NL26 309 aa20.53■□□□□ 0.88
TRIM54-201ENST00000296098 SYNGR1O43759 233 aa20.53■□□□□ 0.88
TRIM54-201ENST00000296098 CCL11P51671 97 aa20.53■□□□□ 0.88
TRIM54-201ENST00000296098 HAGHLQ6PII5 290 aaPredicted RBP20.53■□□□□ 0.88
TRIM54-201ENST00000296098 FOXRED2Q8IWF2 684 aa20.53■□□□□ 0.88
TRIM54-201ENST00000296098 LILRA1O75019 489 aa20.53■□□□□ 0.88
TRIM54-201ENST00000296098 SRSF7Q16629 238 aaKnown RBP eCLIP20.53■□□□□ 0.88
TRIM54-201ENST00000296098 SP6Q3SY56 376 aa20.53■□□□□ 0.88
TRIM54-201ENST00000296098 GALNT11Q8NCW6 608 aa20.53■□□□□ 0.88
TRIM54-201ENST00000296098 OR5T2Q8NGG2 359 aa20.53■□□□□ 0.88
TRIM54-201ENST00000296098 SYT3Q9BQG1 590 aa20.53■□□□□ 0.88
TRIM54-201ENST00000296098 NAPSAO96009 420 aa20.52■□□□□ 0.88
TRIM54-201ENST00000296098 PPYP01298 95 aa20.52■□□□□ 0.88
TRIM54-201ENST00000296098 GNG3P63215 75 aa20.52■□□□□ 0.88
TRIM54-201ENST00000296098 TBC1D28Q2M2D7 210 aa20.52■□□□□ 0.88
TRIM54-201ENST00000296098 IGSF11Q5DX21 431 aa20.52■□□□□ 0.88
TRIM54-201ENST00000296098 ZNF585AQ6P3V2 769 aa20.52■□□□□ 0.88
TRIM54-201ENST00000296098 ZNF573Q86YE8 665 aa20.52■□□□□ 0.88
TRIM54-201ENST00000296098 CCDC71LQ8N9Z2 235 aa20.52■□□□□ 0.88
TRIM54-201ENST00000296098 FDCSPQ8NFU4 85 aa20.52■□□□□ 0.88
TRIM54-201ENST00000296098 RSRP1Q9BUV0 290 aa20.52■□□□□ 0.88
TRIM54-201ENST00000296098 SLC5A7Q9GZV3 580 aa20.52■□□□□ 0.88
TRIM54-201ENST00000296098 PLK3Q9H4B4 646 aa20.52■□□□□ 0.88
TRIM54-201ENST00000296098 Q9N2K0 584 aa20.52■□□□□ 0.88
TRIM54-201ENST00000296098 CLCF1Q9UBD9 225 aa20.52■□□□□ 0.88
TRIM54-201ENST00000296098 B8ZZF3 427 aa20.51■□□□□ 0.87
TRIM54-201ENST00000296098 IGHG3P01860 377 aa20.51■□□□□ 0.87
TRIM54-201ENST00000296098 PRKACAP17612 351 aa20.51■□□□□ 0.87
TRIM54-201ENST00000296098 SMCO1Q147U7 214 aa20.51■□□□□ 0.87
TRIM54-201ENST00000296098 TUSC1Q2TAM9 212 aa20.51■□□□□ 0.87
TRIM54-201ENST00000296098 LINC00596Q86U02 117 aa20.51■□□□□ 0.87
TRIM54-201ENST00000296098 LRTM2Q8N967 370 aa20.51■□□□□ 0.87
TRIM54-201ENST00000296098 GLRX2Q9NS18 164 aa20.51■□□□□ 0.87
TRIM54-201ENST00000296098 OR2T2Q6IF00 324 aa20.51■□□□□ 0.87
TRIM54-201ENST00000296098 NEK7Q8TDX7 302 aa20.51■□□□□ 0.87
TRIM54-201ENST00000296098 PLSCR2Q9NRY7 297 aa20.51■□□□□ 0.87
TRIM54-201ENST00000296098 TAS2R3Q9NYW6 316 aa20.51■□□□□ 0.87
TRIM54-201ENST00000296098 DEDDO75618 318 aa20.5■□□□□ 0.87
TRIM54-201ENST00000296098 SPATA46Q5T0L3 261 aa20.5■□□□□ 0.87
TRIM54-201ENST00000296098 LIAT1Q6ZQX7 453 aa20.5■□□□□ 0.87
TRIM54-201ENST00000296098 OR11L1Q8NGX0 322 aa20.5■□□□□ 0.87
TRIM54-201ENST00000296098 J3QW42 95 aa20.49■□□□□ 0.87
TRIM54-201ENST00000296098 HSPB6O14558 160 aa20.49■□□□□ 0.87
TRIM54-201ENST00000296098 FGF16O43320 207 aa20.49■□□□□ 0.87
TRIM54-201ENST00000296098 HKR1P10072 659 aa20.49■□□□□ 0.87
TRIM54-201ENST00000296098 ZNF14P17017 642 aaPredicted RBP20.49■□□□□ 0.87
TRIM54-201ENST00000296098 TGFBR3Q03167 851 aa20.49■□□□□ 0.87
TRIM54-201ENST00000296098 IL24Q13007 206 aa20.49■□□□□ 0.87
TRIM54-201ENST00000296098 LGI3Q8N145 548 aa20.49■□□□□ 0.87
TRIM54-201ENST00000296098 C18orf12Q96KH6 178 aa20.49■□□□□ 0.87
TRIM54-201ENST00000296098 PKIBQ9C010 78 aa20.49■□□□□ 0.87
TRIM54-201ENST00000296098 SPACA1Q9HBV2 294 aa20.49■□□□□ 0.87
TRIM54-201ENST00000296098 ZC4H2Q9NQZ6 224 aa20.49■□□□□ 0.87
TRIM54-201ENST00000296098 ASF1BQ9NVP2 202 aa20.49■□□□□ 0.87
TRIM54-201ENST00000296098 MED12LQ86YW9 2145 aa20.49■□□□□ 0.87
TRIM54-201ENST00000296098 TAAR5O14804 337 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 DIRAS3O95661 229 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 CA6P23280 308 aa20.48■□□□□ 0.87
TRIM54-201ENST00000296098 DUSP1P28562 367 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms