RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 CACNA1HO95180 2353 aa17.25■□□□□ 0.35
VPS53-201ENST00000291074 HSPB6O14558 160 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 LILRA1O75019 489 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 HKR1P10072 659 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 NAAAQ02083 359 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 ZDHHC23Q8IYP9 409 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 EXTL1Q92935 676 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 POM121L2Q96KW2 1035 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 ZNF732B4DXR9 585 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 PRKACAP17612 351 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 RCC1P18754 421 aaPredicted RBP17.24■□□□□ 0.35
VPS53-201ENST00000291074 AADACP22760 399 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 TMEM187Q14656 261 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 RPL7L1Q6DKI1 246 aaKnown RBP17.24■□□□□ 0.35
VPS53-201ENST00000291074 ZC4H2Q9NQZ6 224 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 KLRC4-KLRK1H3BQV0 150 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 DUSP1P28562 367 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 NOVA1P51513 510 aaKnown RBP17.24■□□□□ 0.35
VPS53-201ENST00000291074 TMPRSS7Q7RTY8 843 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 LYZL2Q7Z4W2 148 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 OR5T2Q8NGG2 359 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 FER1L6-AS2Q96M78 137 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 TMEM9BQ9NQ34 198 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 PCDHB16Q9NRJ7 776 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 MTCH1Q9NZJ7 389 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 DNAJB11Q9UBS4 358 aa17.24■□□□□ 0.35
VPS53-201ENST00000291074 IFNA21P01568 189 aa17.23■□□□□ 0.35
VPS53-201ENST00000291074 SLC10A1Q14973 349 aa17.23■□□□□ 0.35
VPS53-201ENST00000291074 IGFBP7Q16270 282 aa17.23■□□□□ 0.35
VPS53-201ENST00000291074 MARC2Q969Z3 335 aa17.23■□□□□ 0.35
VPS53-201ENST00000291074 LDAHQ9H6V9 325 aa17.23■□□□□ 0.35
VPS53-201ENST00000291074 SYNGR1O43759 233 aa17.23■□□□□ 0.35
VPS53-201ENST00000291074 COX5BP10606 129 aa17.23■□□□□ 0.35
VPS53-201ENST00000291074 RNPS1Q15287 305 aaKnown RBP17.23■□□□□ 0.35
VPS53-201ENST00000291074 CEACAM21Q3KPI0 293 aa17.23■□□□□ 0.35
VPS53-201ENST00000291074 TMEM211Q6ICI0 200 aa17.23■□□□□ 0.35
VPS53-201ENST00000291074 MOB3AQ96BX8 217 aa17.23■□□□□ 0.35
VPS53-201ENST00000291074 SPRR3Q9UBC9 169 aa17.23■□□□□ 0.35
VPS53-201ENST00000291074 TUBD1Q9UJT1 453 aa17.23■□□□□ 0.35
VPS53-201ENST00000291074 KCNIP3Q9Y2W7 256 aa17.23■□□□□ 0.35
VPS53-201ENST00000291074 SS18L1O75177 396 aaPredicted RBP17.22■□□□□ 0.35
VPS53-201ENST00000291074 WNT5AP41221 380 aa17.22■□□□□ 0.35
VPS53-201ENST00000291074 ZFP62Q8NB50 900 aaPredicted RBP17.22■□□□□ 0.35
VPS53-201ENST00000291074 ZNF488Q96MN9 340 aa17.22■□□□□ 0.35
VPS53-201ENST00000291074 PIGMQ9H3S5 423 aa17.22■□□□□ 0.35
VPS53-201ENST00000291074 RNF122Q9H9V4 155 aa17.22■□□□□ 0.35
VPS53-201ENST00000291074 TMEM100Q9NV29 134 aa17.22■□□□□ 0.35
VPS53-201ENST00000291074 DEDDO75618 318 aa17.22■□□□□ 0.35
VPS53-201ENST00000291074 IL18BPO95998 194 aa17.22■□□□□ 0.35
VPS53-201ENST00000291074 ACTL6AO96019 429 aa17.22■□□□□ 0.35
VPS53-201ENST00000291074 FAM157CP0CG43 387 aa17.22■□□□□ 0.35
VPS53-201ENST00000291074 ARR3P36575 388 aa17.22■□□□□ 0.35
VPS53-201ENST00000291074 GLP1RP43220 463 aa17.22■□□□□ 0.35
VPS53-201ENST00000291074 DEFA5Q01523 94 aa17.22■□□□□ 0.35
VPS53-201ENST00000291074 STK11Q15831 433 aa17.22■□□□□ 0.35
VPS53-201ENST00000291074 FAM122CQ6P4D5 195 aa17.22■□□□□ 0.35
VPS53-201ENST00000291074 CLEC9AQ6UXN8 241 aa17.22■□□□□ 0.35
VPS53-201ENST00000291074 TFAP2EQ6VUC0 442 aa17.22■□□□□ 0.35
VPS53-201ENST00000291074 SMIM3Q9BZL3 60 aa17.22■□□□□ 0.35
VPS53-201ENST00000291074 CD300LBA8K4G0 201 aa17.21■□□□□ 0.35
VPS53-201ENST00000291074 LRP3O75074 770 aa17.21■□□□□ 0.35
VPS53-201ENST00000291074 CD46P15529 392 aa17.21■□□□□ 0.35
VPS53-201ENST00000291074 PMP22Q01453 160 aa17.21■□□□□ 0.35
VPS53-201ENST00000291074 Q8NFD4 153 aa17.21■□□□□ 0.35
VPS53-201ENST00000291074 RNF141Q8WVD5 230 aa17.21■□□□□ 0.35
VPS53-201ENST00000291074 GALNT14Q96FL9 552 aa17.21■□□□□ 0.35
VPS53-201ENST00000291074 K7EPK0 472 aa17.21■□□□□ 0.35
VPS53-201ENST00000291074 DIRAS3O95661 229 aa17.21■□□□□ 0.35
VPS53-201ENST00000291074 CST4P01036 141 aa17.21■□□□□ 0.35
VPS53-201ENST00000291074 RPL12P30050 165 aaKnown RBP17.21■□□□□ 0.35
VPS53-201ENST00000291074 FGF12P61328 243 aa17.21■□□□□ 0.35
VPS53-201ENST00000291074 HERV-K104P61576 105 aa17.21■□□□□ 0.35
VPS53-201ENST00000291074 PLP2Q04941 152 aa17.21■□□□□ 0.35
VPS53-201ENST00000291074 FAM71E2Q8N5Q1 922 aa17.21■□□□□ 0.35
VPS53-201ENST00000291074 LHFPL5Q8TAF8 219 aa17.21■□□□□ 0.35
VPS53-201ENST00000291074 GLYATL2Q8WU03 294 aa17.21■□□□□ 0.35
VPS53-201ENST00000291074 PPYP01298 95 aa17.2■□□□□ 0.34
VPS53-201ENST00000291074 ZNF806P0C7X5 589 aa17.2■□□□□ 0.34
VPS53-201ENST00000291074 ARG2P78540 354 aa17.2■□□□□ 0.34
VPS53-201ENST00000291074 SRSF3P84103 164 aaKnown RBP17.2■□□□□ 0.34
VPS53-201ENST00000291074 TSC22D1Q15714 1073 aa17.2■□□□□ 0.34
VPS53-201ENST00000291074 LRRC46Q96FV0 321 aa17.2■□□□□ 0.34
VPS53-201ENST00000291074 WDYHV1Q96HA8 205 aa17.2■□□□□ 0.34
VPS53-201ENST00000291074 IP6K3Q96PC2 410 aa17.2■□□□□ 0.34
VPS53-201ENST00000291074 PRRX2Q99811 253 aa17.2■□□□□ 0.34
VPS53-201ENST00000291074 ZNF705EA8MWA4 302 aaPredicted RBP17.2■□□□□ 0.34
VPS53-201ENST00000291074 PHF1O43189 567 aaPredicted RBP17.2■□□□□ 0.34
VPS53-201ENST00000291074 MBPP02686 304 aaPredicted RBP17.2■□□□□ 0.34
VPS53-201ENST00000291074 SPATA46Q5T0L3 261 aa17.2■□□□□ 0.34
VPS53-201ENST00000291074 HAGHLQ6PII5 290 aaPredicted RBP17.2■□□□□ 0.34
VPS53-201ENST00000291074 MSI2Q96DH6 328 aaKnown RBP17.2■□□□□ 0.34
VPS53-201ENST00000291074 FBXL17Q9UF56 701 aa17.2■□□□□ 0.34
VPS53-201ENST00000291074 EP300Q09472 2414 aaPredicted RBP17.19■□□□□ 0.34
VPS53-201ENST00000291074 IL32P24001 234 aa17.19■□□□□ 0.34
VPS53-201ENST00000291074 SRSF6Q13247 344 aaKnown RBP17.19■□□□□ 0.34
VPS53-201ENST00000291074 SMCO1Q147U7 214 aa17.19■□□□□ 0.34
VPS53-201ENST00000291074 ZNF766Q5HY98 468 aa17.19■□□□□ 0.34
VPS53-201ENST00000291074 LIAT1Q6ZQX7 453 aa17.19■□□□□ 0.34
VPS53-201ENST00000291074 NEK7Q8TDX7 302 aa17.19■□□□□ 0.34
VPS53-201ENST00000291074 TP53RKQ96S44 253 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms