RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PRSS2P07478 247 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 OR3A4PP47883 348 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 RAG2P55895 527 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 TEX29Q8N6K0 151 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 MRPL43Q8N983 215 aaKnown RBP12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 OR10J6PQ8NGY7 276 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 ASCL3Q9NQ33 180 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 LIPGQ9Y5X9 500 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 SIX1Q15475 284 aaPredicted RBP12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 LRRTM3Q86VH5 581 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 ZNF665Q9H7R5 613 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 PLPP1O14494 284 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 FOXO1Q12778 655 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 OR8B3Q8NGG8 313 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 OR8B2Q96RD0 313 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 DOK1Q99704 481 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 GEMIN7Q9H840 131 aaKnown RBP12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 C9orf170A2RU37 121 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 HMSDA8MTL9 139 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 GABRA1P14867 456 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 PCMT1P22061 227 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 NPBWR2P48146 333 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 SLC26A1Q9H2B4 701 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 TNFSF10P50591 281 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 SPATA46Q5T0L3 261 aa12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 MBNL1Q9NR56 388 aaKnown RBP12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 CDX4O14627 284 aaPredicted RBP12.45□□□□□ -0.42
CCDC88A-201ENST00000263630 MEIG1Q5JSS6 88 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 SLC46A2Q9BY10 475 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 COL14A1Q05707 1796 aaKnown RBP12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 IL4P05112 153 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 GALP22466 123 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 TNFAIP6P98066 277 aaPredicted RBP12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 PAPPA-AS1Q5QFB9 102 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 TRILQ7L0X0 811 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 NKAIN4Q8IVV8 208 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 TTC9BQ8N6N2 239 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 PCOLCE2Q9UKZ9 415 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 FUT9Q9Y231 359 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 MROH1Q8NDA8 1641 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 A0A1W2PNR3 127 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 AKR7A2O43488 359 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 PFN3P60673 137 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 DEFB109BQ30KR1 87 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 NDUFB6O95139 128 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 F11P03951 625 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 ZNF735P0CB33 412 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 POLR2IP36954 125 aaKnown RBP12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 MRGPREQ86SM8 312 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 OR4C13Q8NGP0 309 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 TXNRD2Q9NNW7 524 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 IGHV3-15A0A0B4J1V0 119 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 LINC00303Q3SY05 128 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 RAC3P60763 192 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 DIRC2Q96SL1 478 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 TMUB1Q9BVT8 246 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 NARFLQ9H6Q4 476 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 FAM53CQ9NYF3 392 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 WNT16Q9UBV4 365 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 RABAC1Q9UI14 185 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 DAPP1Q9UN19 280 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 DOCK10Q96BY6 2186 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 ZNF142P52746 1687 aaPredicted RBP12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 FBXO46Q6PJ61 603 aaPredicted RBP12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 ABHD14AQ9BUJ0 271 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 C20orf27Q9GZN8 174 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 AUNIPQ9H7T9 357 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 ZMIZ1Q9ULJ6 1067 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 GEMIN2O14893 280 aaKnown RBP12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 SFT2D2O95562 160 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 MRPL58Q14197 206 aaKnown RBP12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 VN1R1Q9GZP7 353 aa12.44□□□□□ -0.42
CCDC88A-201ENST00000263630 WNT9BO14905 357 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 CLLU1OSQ5K130 101 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 C15orf39Q6ZRI6 1047 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 ARL6IP6Q8N6S5 226 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 ZNF296Q8WUU4 475 aaPredicted RBP12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 GUCD1Q96NT3 240 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 OR2V2Q96R30 315 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 SPATA45Q537H7 98 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 KIDINS220Q9ULH0 1771 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 MBLAC1A4D2B0 266 aaPredicted RBP12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 OR5AC1P0C628 307 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 CKS2P33552 79 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 P2RY1P47900 373 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 MFAP4P55083 255 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 RTP5Q14D33 572 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 STPG3Q8N7X2 389 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 SIGLEC11Q96RL6 698 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 KLK11Q9UBX7 282 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 KCNAB1Q14722 419 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 PI4KAP42356 2102 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 PHIPQ8WWQ0 1821 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 DOCK11Q5JSL3 2073 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 MRPL30Q8TCC3 161 aaKnown RBP12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 CCL17Q92583 94 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 FAM157CP0CG43 387 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 ERVFRD-1P60508 538 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 KISS1Q15726 138 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms