RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ZNF788Q6ZQV5 615 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 MRPL22Q9NWU5 206 aaKnown RBP16.91■□□□□ 0.3
UPF1-201ENST00000262803 ANKRD20A5PA0PJZ0 165 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 OR2M5A3KFT3 312 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 FOXO1Q12778 655 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 SLC25A42Q86VD7 318 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 MMP26Q9NRE1 261 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 V9GYH0 126 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 GSTZ1O43708 216 aaPredicted RBP16.91■□□□□ 0.3
UPF1-201ENST00000262803 NTN1O95631 604 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 IGHA1P01876 353 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 RNF212Q495C1 297 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 KRTCAP3Q53RY4 240 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 LIAT1Q6ZQX7 453 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 LSMEM1Q8N8F7 131 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 PERPQ96FX8 193 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 ST6GAL2Q96JF0 529 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 FLRT3Q9NZU0 649 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 PRNDQ9UKY0 176 aa16.91■□□□□ 0.3
UPF1-201ENST00000262803 SEMA7AO75326 666 aa16.9■□□□□ 0.3
UPF1-201ENST00000262803 MANBALQ9NQG1 85 aa16.9■□□□□ 0.3
UPF1-201ENST00000262803 NTMQ9P121 344 aa16.9■□□□□ 0.3
UPF1-201ENST00000262803 MPZL1O95297 269 aa16.9■□□□□ 0.3
UPF1-201ENST00000262803 IL9P15248 144 aa16.9■□□□□ 0.3
UPF1-201ENST00000262803 MOGAT2Q3SYC2 334 aa16.9■□□□□ 0.3
UPF1-201ENST00000262803 CXorf67Q86X51 503 aaPredicted RBP16.9■□□□□ 0.3
UPF1-201ENST00000262803 SAP30LQ9HAJ7 183 aa16.9■□□□□ 0.3
UPF1-201ENST00000262803 PCDHGA9Q9Y5G4 932 aaKnown RBP16.9■□□□□ 0.3
UPF1-201ENST00000262803 J3QT63 122 aa16.9■□□□□ 0.3
UPF1-201ENST00000262803 GNG4P50150 75 aa16.9■□□□□ 0.3
UPF1-201ENST00000262803 Q1RN00 199 aa16.9■□□□□ 0.3
UPF1-201ENST00000262803 TMEM171Q8WVE6 324 aa16.9■□□□□ 0.3
UPF1-201ENST00000262803 DLEC1Q9Y238 1755 aa16.9■□□□□ 0.3
UPF1-201ENST00000262803 C9orf170A2RU37 121 aa16.9■□□□□ 0.3
UPF1-201ENST00000262803 COX7A1P24310 79 aa16.9■□□□□ 0.3
UPF1-201ENST00000262803 SLC37A1P57057 533 aa16.9■□□□□ 0.3
UPF1-201ENST00000262803 PSG6Q00889 435 aa16.9■□□□□ 0.3
UPF1-201ENST00000262803 CLEC12BQ2HXU8 276 aa16.9■□□□□ 0.3
UPF1-201ENST00000262803 PLAC9Q5JTB6 97 aa16.9■□□□□ 0.3
UPF1-201ENST00000262803 CNTD2Q9H8S5 307 aa16.9■□□□□ 0.3
UPF1-201ENST00000262803 TECRQ9NZ01 308 aaKnown RBP16.9■□□□□ 0.3
UPF1-201ENST00000262803 WISP3O95389 354 aaPredicted RBP16.89■□□□□ 0.3
UPF1-201ENST00000262803 FAM209AQ5JX71 171 aa16.89■□□□□ 0.3
UPF1-201ENST00000262803 ZNF441Q8N8Z8 693 aa16.89■□□□□ 0.3
UPF1-201ENST00000262803 STXBP6Q8NFX7 210 aa16.89■□□□□ 0.3
UPF1-201ENST00000262803 ANGPTL6Q8NI99 470 aa16.89■□□□□ 0.3
UPF1-201ENST00000262803 CTDSPLO15194 276 aa16.89■□□□□ 0.29
UPF1-201ENST00000262803 OGG1O15527 345 aa16.89■□□□□ 0.29
UPF1-201ENST00000262803 CDC34P49427 236 aaPredicted RBP16.89■□□□□ 0.29
UPF1-201ENST00000262803 SP7Q8TDD2 431 aaPredicted RBP16.89■□□□□ 0.29
UPF1-201ENST00000262803 STARD10Q9Y365 291 aa16.89■□□□□ 0.29
UPF1-201ENST00000262803 PCM1Q15154 2024 aa16.89■□□□□ 0.29
UPF1-201ENST00000262803 A0A1W2PPQ1 181 aa16.89■□□□□ 0.29
UPF1-201ENST00000262803 SFTA3P0C7M3 94 aa16.89■□□□□ 0.29
UPF1-201ENST00000262803 C6orf201Q7Z4U5 140 aa16.89■□□□□ 0.29
UPF1-201ENST00000262803 ATG4DQ86TL0 474 aaPredicted RBP16.89■□□□□ 0.29
UPF1-201ENST00000262803 OR1L6Q8NGR2 347 aa16.89■□□□□ 0.29
UPF1-201ENST00000262803 FAAP24Q9BTP7 215 aa16.89■□□□□ 0.29
UPF1-201ENST00000262803 GATCO43716 136 aaKnown RBP16.89■□□□□ 0.29
UPF1-201ENST00000262803 ZNF429Q86V71 674 aa16.89■□□□□ 0.29
UPF1-201ENST00000262803 MIXL1Q9H2W2 232 aa16.89■□□□□ 0.29
UPF1-201ENST00000262803 MIDNQ504T8 468 aa16.89■□□□□ 0.29
UPF1-201ENST00000262803 TMEM97Q5BJF2 176 aa16.89■□□□□ 0.29
UPF1-201ENST00000262803 SMRP1Q8NCR6 262 aa16.89■□□□□ 0.29
UPF1-201ENST00000262803 C16orf97H3BN30 126 aa16.88■□□□□ 0.29
UPF1-201ENST00000262803 MPC2O95563 127 aa16.88■□□□□ 0.29
UPF1-201ENST00000262803 RAB32Q13637 225 aa16.88■□□□□ 0.29
UPF1-201ENST00000262803 CD226Q15762 336 aa16.88■□□□□ 0.29
UPF1-201ENST00000262803 GUK1Q16774 197 aa16.88■□□□□ 0.29
UPF1-201ENST00000262803 CSF2RBP32927 897 aa16.88■□□□□ 0.29
UPF1-201ENST00000262803 OR3A1P47881 315 aa16.88■□□□□ 0.29
UPF1-201ENST00000262803 PAFAH1B2P68402 229 aa16.88■□□□□ 0.29
UPF1-201ENST00000262803 ETFDHQ16134 617 aa16.88■□□□□ 0.29
UPF1-201ENST00000262803 PRSS54Q6PEW0 395 aa16.88■□□□□ 0.29
UPF1-201ENST00000262803 VSTM2LQ96N03 204 aa16.88■□□□□ 0.29
UPF1-201ENST00000262803 SEC16AO15027 2179 aa16.88■□□□□ 0.29
UPF1-201ENST00000262803 GZMMP51124 257 aa16.88■□□□□ 0.29
UPF1-201ENST00000262803 GGNBP1Q5YKI7 109 aa16.88■□□□□ 0.29
UPF1-201ENST00000262803 UBALD1Q8TB05 177 aa16.88■□□□□ 0.29
UPF1-201ENST00000262803 FAM103A1Q9BTL3 118 aaKnown RBP16.88■□□□□ 0.29
UPF1-201ENST00000262803 PIPOXQ9P0Z9 390 aa16.88■□□□□ 0.29
UPF1-201ENST00000262803 MAP1LC3B2A6NCE7 125 aa16.88■□□□□ 0.29
UPF1-201ENST00000262803 INHBBP09529 407 aa16.88■□□□□ 0.29
UPF1-201ENST00000262803 IRF3Q14653 427 aa16.88■□□□□ 0.29
UPF1-201ENST00000262803 HSD17B10Q99714 261 aaKnown RBP16.88■□□□□ 0.29
UPF1-201ENST00000262803 MAP1LC3BQ9GZQ8 125 aa16.88■□□□□ 0.29
UPF1-201ENST00000262803 SPAG17Q6Q759 2223 aa16.87■□□□□ 0.29
UPF1-201ENST00000262803 ONECUT2O95948 504 aa16.87■□□□□ 0.29
UPF1-201ENST00000262803 TMEM241Q24JQ0 296 aa16.87■□□□□ 0.29
UPF1-201ENST00000262803 TRPM6Q9BX84 2022 aa16.87■□□□□ 0.29
UPF1-201ENST00000262803 TOX4O94842 621 aa16.87■□□□□ 0.29
UPF1-201ENST00000262803 HAND1O96004 215 aa16.87■□□□□ 0.29
UPF1-201ENST00000262803 MLF1P58340 268 aa16.87■□□□□ 0.29
UPF1-201ENST00000262803 TNXAQ16473 311 aa16.87■□□□□ 0.29
UPF1-201ENST00000262803 CACNG5Q9UF02 275 aa16.87■□□□□ 0.29
UPF1-201ENST00000262803 KIAA1217Q5T5P2 1943 aa16.87■□□□□ 0.29
UPF1-201ENST00000262803 LOC102723971A0A1B0GUV8 181 aa16.87■□□□□ 0.29
UPF1-201ENST00000262803 RPS4Y1P22090 263 aaKnown RBP16.87■□□□□ 0.29
UPF1-201ENST00000262803 ZNF273Q14593 569 aa16.87■□□□□ 0.29
UPF1-201ENST00000262803 C1QL3Q5VWW1 255 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms