RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 DUSP3P51452 185 aaPredicted RBP13.15□□□□□ -0.3
DDX56-201ENST00000258772 RPS18P62269 152 aaKnown RBP13.15□□□□□ -0.3
DDX56-201ENST00000258772 HMGN3Q15651 99 aa13.15□□□□□ -0.3
DDX56-201ENST00000258772 ETV3LQ6ZN32 361 aa13.15□□□□□ -0.3
DDX56-201ENST00000258772 PPP1R32Q7Z5V6 425 aa13.15□□□□□ -0.3
DDX56-201ENST00000258772 ZNF611Q8N823 705 aa13.15□□□□□ -0.3
DDX56-201ENST00000258772 MAFAQ8NHW3 353 aaPredicted RBP13.15□□□□□ -0.3
DDX56-201ENST00000258772 SPSB4Q96A44 273 aa13.15□□□□□ -0.3
DDX56-201ENST00000258772 TP53RKQ96S44 253 aa13.15□□□□□ -0.3
DDX56-201ENST00000258772 PLSCR2Q9NRY7 297 aa13.15□□□□□ -0.3
DDX56-201ENST00000258772 DOCK10Q96BY6 2186 aa13.15□□□□□ -0.3
DDX56-201ENST00000258772 PPYP01298 95 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 IGHEP01854 428 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 GLAP06280 429 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 OTX2P32243 289 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 FHITP49789 147 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 ZNF616Q08AN1 781 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 IGSF11Q5DX21 431 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 SLC25A26Q70HW3 274 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 SLC35G3Q8N808 338 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 CPEB3Q8NE35 698 aaKnown RBP13.14□□□□□ -0.31
DDX56-201ENST00000258772 OR4D5Q8NGN0 318 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 C2CD4CQ8TF44 421 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 ABHD3Q8WU67 409 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 ZNF845Q96IR2 970 aaPredicted RBP13.14□□□□□ -0.31
DDX56-201ENST00000258772 C1QTNF5Q9BXJ0 243 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 DEPPQ9NTK1 212 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 RCL1Q9Y2P8 373 aaKnown RBP13.14□□□□□ -0.31
DDX56-201ENST00000258772 MPPED1O15442 326 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 CYTIPO60759 359 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 KCNJ3P48549 501 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 CAMLGP49069 296 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 GUK1Q16774 197 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 AKIRIN2Q53H80 203 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 TRIM61Q5EBN2 209 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 BATF2Q8N1L9 274 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 HPSE2Q8WWQ2 592 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 PARPBPQ9NWS1 579 aa13.14□□□□□ -0.31
DDX56-201ENST00000258772 PAX6P26367 422 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 NOVA1P51513 510 aaKnown RBP13.13□□□□□ -0.31
DDX56-201ENST00000258772 MEX3BQ6ZN04 569 aaKnown RBP13.13□□□□□ -0.31
DDX56-201ENST00000258772 ZFP82Q8N141 532 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 C15orf54Q8N8G6 183 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 Q8NFD4 153 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 POM121Q96HA1 1249 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 PRDM14Q9GZV8 571 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 SH3BGRL3Q9H299 93 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 RNF122Q9H9V4 155 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 C3orf85A0A1B0GTC6 90 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 PQLC2LA1A4F0 135 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 C1QL1O75973 258 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 IGHV3-9P01782 118 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 FOLR2P14207 255 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 GNRHRP30968 328 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 RAB5CP51148 216 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 GNMTQ14749 295 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 ACER2Q5QJU3 275 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 HSD17B11Q8NBQ5 300 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 CPNE4Q96A23 557 aaPredicted RBP13.13□□□□□ -0.31
DDX56-201ENST00000258772 CLCC1Q96S66 551 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 EGLN1Q9GZT9 426 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 C19orf12Q9NSK7 152 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 RYDENQ9NUL5 291 aaKnown RBP13.13□□□□□ -0.31
DDX56-201ENST00000258772 COA4Q9NYJ1 87 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 TCFL5Q9UL49 500 aa13.13□□□□□ -0.31
DDX56-201ENST00000258772 MRPS18CQ9Y3D5 142 aaKnown RBP13.13□□□□□ -0.31
DDX56-201ENST00000258772 RPL36A-HNRNPH2H7BZ11 118 aa13.12□□□□□ -0.31
DDX56-201ENST00000258772 LMO1P25800 156 aa13.12□□□□□ -0.31
DDX56-201ENST00000258772 GDF1P27539 372 aa13.12□□□□□ -0.31
DDX56-201ENST00000258772 AKR1C3P42330 323 aa13.12□□□□□ -0.31
DDX56-201ENST00000258772 COLCA1Q6ZS62 124 aa13.12□□□□□ -0.31
DDX56-201ENST00000258772 WDR5BQ86VZ2 330 aa13.12□□□□□ -0.31
DDX56-201ENST00000258772 EIF5A2Q9GZV4 153 aaKnown RBP13.12□□□□□ -0.31
DDX56-201ENST00000258772 TMEM222Q9H0R3 208 aa13.12□□□□□ -0.31
DDX56-201ENST00000258772 RPS10P5Q9NQ39 176 aa13.12□□□□□ -0.31
DDX56-201ENST00000258772 SLC7A10Q9NS82 523 aa13.12□□□□□ -0.31
DDX56-201ENST00000258772 STRAPQ9Y3F4 350 aaKnown RBP13.12□□□□□ -0.31
DDX56-201ENST00000258772 TMEM265A0A087WTH1 108 aa13.12□□□□□ -0.31
DDX56-201ENST00000258772 PINLYPA6NC86 204 aa13.12□□□□□ -0.31
DDX56-201ENST00000258772 NKX2-6A6NCS4 301 aa13.12□□□□□ -0.31
DDX56-201ENST00000258772 CDS2O95674 445 aa13.12□□□□□ -0.31
DDX56-201ENST00000258772 PRH1P02810 166 aa13.12□□□□□ -0.31
DDX56-201ENST00000258772 GFRA1P56159 465 aa13.12□□□□□ -0.31
DDX56-201ENST00000258772 FAM185AQ8N0U4 392 aa13.12□□□□□ -0.31
DDX56-201ENST00000258772 EXTL1Q92935 676 aa13.12□□□□□ -0.31
DDX56-201ENST00000258772 C14orf79Q96F83 325 aa13.12□□□□□ -0.31
DDX56-201ENST00000258772 BOD1Q96IK1 185 aa13.12□□□□□ -0.31
DDX56-201ENST00000258772 USB1Q9BQ65 265 aaKnown RBP13.12□□□□□ -0.31
DDX56-201ENST00000258772 TRIOBPQ9H2D6 2365 aa13.12□□□□□ -0.31
DDX56-201ENST00000258772 DMDP11532 3685 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 TRDCB7Z8K6 153 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 CYB561P49447 251 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 EWSR1Q01844 656 aaKnown RBP eCLIP13.11□□□□□ -0.31
DDX56-201ENST00000258772 CDCP2Q5VXM1 449 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 SLC23A3Q6PIS1 610 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 Q6ZS49 121 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 KDF1Q8NAX2 398 aaPredicted RBP13.11□□□□□ -0.31
DDX56-201ENST00000258772 SVIPQ8NHG7 77 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 TMEM45BQ96B21 275 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 C12orf57Q99622 126 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms