RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 RGS13O14921 159 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 NUPL2O15504 423 aaKnown RBP7.43□□□□□ -1.22
VPS4B-201ENST00000238497 RP2O75695 350 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 CHRM2P08172 466 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 CPT2P23786 658 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 SERPINF1P36955 418 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 NPBWR2P48146 333 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 MEF2DQ14814 521 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 FBXL19-AS1Q494R0 122 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 CLEC9AQ6UXN8 241 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 SLC36A1Q7Z2H8 476 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 COMMD7Q86VX2 200 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 IL1F10Q8WWZ1 152 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 TMEM54Q969K7 222 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 SMIM3Q9BZL3 60 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 WNT5BQ9H1J7 359 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 SONP18583 2426 aaKnown RBP7.43□□□□□ -1.22
VPS4B-201ENST00000238497 IGKV1D-8A0A087WSZ0 117 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 MPTX1A8MV57 137 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 RAB35Q15286 201 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 ABCA11PQ4W5N1 156 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 TMUB2Q71RG4 321 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 ZNF767PQ75MW2 155 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 C17orf78Q8N4C9 275 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 OR6K3Q8NGY3 331 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 DCUN1D4Q92564 292 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 SCPEP1Q9HB40 452 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 STARD10Q9Y365 291 aa7.43□□□□□ -1.22
VPS4B-201ENST00000238497 PDZD2O15018 2839 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 LOC102725191A0A1B0GVB3 256 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 TMEM14DPA8MWL7 114 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 GIPP09681 153 aaPredicted RBP7.42□□□□□ -1.22
VPS4B-201ENST00000238497 ZNF250P15622 560 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 S100A11P31949 105 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 PCBD1P61457 104 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 HIST3H3Q16695 136 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 HAGHLQ6PII5 290 aaPredicted RBP7.42□□□□□ -1.22
VPS4B-201ENST00000238497 DRAM2Q6UX65 266 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 SEZ6L2Q6UXD5 910 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 PEG10Q86TG7 708 aaKnown RBP7.42□□□□□ -1.22
VPS4B-201ENST00000238497 INO80EQ8NBZ0 244 aaPredicted RBP7.42□□□□□ -1.22
VPS4B-201ENST00000238497 ADPRHL1Q8NDY3 354 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 TERB2Q8NHR7 220 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 AQP3Q92482 292 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 PECRQ9BY49 303 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 BCL2L14Q9BZR8 327 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 SLC17A5Q9NRA2 495 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 IL36RNQ9UBH0 155 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 A0A0B4J2A0 478 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 SNRPGP15A8MWD9 76 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 MCRIP1C9JLW8 97 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 ETV2O00321 342 aaPredicted RBP7.42□□□□□ -1.22
VPS4B-201ENST00000238497 AGTR1P30556 359 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 LUMP51884 338 aaPredicted RBP7.42□□□□□ -1.22
VPS4B-201ENST00000238497 AKR1C2P52895 323 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 RAG2P55895 527 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 AKR1C1Q04828 323 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 MALLQ13021 153 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 RNPS1Q15287 305 aaKnown RBP7.42□□□□□ -1.22
VPS4B-201ENST00000238497 BEND4Q6ZU67 534 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 CALHM1Q8IU99 346 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 ADGRG7Q96K78 797 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 CHST5Q9GZS9 411 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 PARP12Q9H0J9 701 aaKnown RBP7.42□□□□□ -1.22
VPS4B-201ENST00000238497 ESRP2Q9H6T0 727 aaKnown RBP7.42□□□□□ -1.22
VPS4B-201ENST00000238497 EMC3Q9P0I2 261 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 SHPKQ9UHJ6 478 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 C14orf166Q9Y224 244 aaKnown RBP7.42□□□□□ -1.22
VPS4B-201ENST00000238497 A0A1B0GV50 99 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 C9orf170A2RU37 121 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 ZSCAN5BA6NJL1 495 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 DHRS7CA6NNS2 312 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 ALX3O95076 343 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 IL5P05113 134 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 GRPP07492 148 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 RPA2P15927 270 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 C4BPBP20851 252 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 CA6P23280 308 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 APLNRP35414 380 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 THBS4P35443 961 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 HOXA4Q00056 320 aaPredicted RBP7.42□□□□□ -1.22
VPS4B-201ENST00000238497 IKZF1Q13422 519 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 CNN3Q15417 329 aaKnown RBP7.42□□□□□ -1.22
VPS4B-201ENST00000238497 AKIRIN2Q53H80 203 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 C10orf128Q5T292 105 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 SLC22A25Q6T423 547 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 ZNF611Q8N823 705 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 OR5L1Q8NGL2 311 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 PP6455Q8WZ26 134 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 ZNF75AQ96N20 296 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 SF3B5Q9BWJ5 86 aaKnown RBP7.42□□□□□ -1.22
VPS4B-201ENST00000238497 MBD2Q9UBB5 411 aa7.42□□□□□ -1.22
VPS4B-201ENST00000238497 LSM5Q9Y4Y9 91 aaKnown RBP7.42□□□□□ -1.22
VPS4B-201ENST00000238497 IGKV1-27A0A075B6S5 117 aa7.41□□□□□ -1.22
VPS4B-201ENST00000238497 KANTRA0A1W2PQU2 76 aa7.41□□□□□ -1.22
VPS4B-201ENST00000238497 ZNF732B4DXR9 585 aa7.41□□□□□ -1.22
VPS4B-201ENST00000238497 SYNGR3O43761 229 aa7.41□□□□□ -1.22
VPS4B-201ENST00000238497 RPS27AP62979 156 aaKnown RBP7.41□□□□□ -1.22
VPS4B-201ENST00000238497 ALKBH6Q3KRA9 238 aa7.41□□□□□ -1.22
VPS4B-201ENST00000238497 VHLLQ6RSH7 139 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms