RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 PSD2Q9BQI7 771 aa12.03□□□□□ -0.48
SIX4-201ENST00000216513 TIMM9Q9Y5J7 89 aa12.03□□□□□ -0.48
SIX4-201ENST00000216513 TMEM129A0AVI4 362 aa12.02□□□□□ -0.48
SIX4-201ENST00000216513 HRASP01112 189 aa12.02□□□□□ -0.48
SIX4-201ENST00000216513 SNRPCP09234 159 aaKnown RBP12.02□□□□□ -0.48
SIX4-201ENST00000216513 LSM6P62312 80 aaKnown RBP12.02□□□□□ -0.48
SIX4-201ENST00000216513 LCN2P80188 198 aa12.02□□□□□ -0.48
SIX4-201ENST00000216513 PXDC1Q5TGL8 231 aa12.02□□□□□ -0.48
SIX4-201ENST00000216513 RPUSD4Q96CM3 377 aaKnown RBP12.02□□□□□ -0.48
SIX4-201ENST00000216513 VDAC1P21796 283 aa12.02□□□□□ -0.48
SIX4-201ENST00000216513 LIMK1P53667 647 aa12.02□□□□□ -0.48
SIX4-201ENST00000216513 ARF6P62330 175 aa12.02□□□□□ -0.48
SIX4-201ENST00000216513 MRPS11P82912 194 aaKnown RBP12.02□□□□□ -0.48
SIX4-201ENST00000216513 TGIF2LYQ8IUE0 185 aa12.02□□□□□ -0.48
SIX4-201ENST00000216513 TGIF2LXQ8IUE1 241 aa12.02□□□□□ -0.48
SIX4-201ENST00000216513 SVBPQ8N300 66 aa12.02□□□□□ -0.48
SIX4-201ENST00000216513 OR1K1Q8NGR3 316 aa12.02□□□□□ -0.48
SIX4-201ENST00000216513 SIRT7Q9NRC8 400 aa12.02□□□□□ -0.48
SIX4-201ENST00000216513 NUP214P35658 2090 aaPredicted RBP12.02□□□□□ -0.48
SIX4-201ENST00000216513 CST7O76096 145 aa12.02□□□□□ -0.49
SIX4-201ENST00000216513 BGLAPP02818 100 aa12.02□□□□□ -0.49
SIX4-201ENST00000216513 PIGPP57054 158 aa12.02□□□□□ -0.49
SIX4-201ENST00000216513 GVQW1Q8N7I0 195 aa12.02□□□□□ -0.49
SIX4-201ENST00000216513 OR4D11Q8NGI4 311 aa12.02□□□□□ -0.49
SIX4-201ENST00000216513 DUS3LQ96G46 650 aaKnown RBP12.02□□□□□ -0.49
SIX4-201ENST00000216513 THYN1Q9P016 225 aa12.02□□□□□ -0.49
SIX4-201ENST00000216513 CES1P1Q9UKY3 287 aa12.02□□□□□ -0.49
SIX4-201ENST00000216513 A0A0G2JMM0 328 aa12.02□□□□□ -0.49
SIX4-201ENST00000216513 A0A1W2PPB8 328 aa12.02□□□□□ -0.49
SIX4-201ENST00000216513 A0A1W2PPE3 182 aa12.02□□□□□ -0.49
SIX4-201ENST00000216513 A0A1W2PRS3 328 aa12.02□□□□□ -0.49
SIX4-201ENST00000216513 KIR3DP1A8MWS1 328 aa12.02□□□□□ -0.49
SIX4-201ENST00000216513 CDC42EP2O14613 210 aa12.02□□□□□ -0.49
SIX4-201ENST00000216513 APOBEC3AP31941 199 aaPredicted RBP12.02□□□□□ -0.49
SIX4-201ENST00000216513 BSPH1Q075Z2 132 aa12.02□□□□□ -0.49
SIX4-201ENST00000216513 ICAM5Q9UMF0 924 aa12.02□□□□□ -0.49
SIX4-201ENST00000216513 IGHV1-69-2A0A0G2JMI3 117 aa12.02□□□□□ -0.49
SIX4-201ENST00000216513 ZFP36L1Q07352 338 aaKnown RBP12.02□□□□□ -0.49
SIX4-201ENST00000216513 NANPQ8TBE9 248 aa12.02□□□□□ -0.49
SIX4-201ENST00000216513 RNASE6Q93091 150 aaKnown RBP12.02□□□□□ -0.49
SIX4-201ENST00000216513 C14orf79Q96F83 325 aa12.02□□□□□ -0.49
SIX4-201ENST00000216513 NXF2Q9GZY0 626 aaKnown RBP12.02□□□□□ -0.49
SIX4-201ENST00000216513 KCNIP2Q9NS61 270 aa12.02□□□□□ -0.49
SIX4-201ENST00000216513 F6UZH7 168 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 PAX6P26367 422 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 NKX2-1P43699 371 aaPredicted RBP12.01□□□□□ -0.49
SIX4-201ENST00000216513 KCNMB1Q16558 191 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 ZSWIM8A7E2V4 1837 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 ZNF724A8MTY0 619 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 S100A11P31949 105 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 MDH2P40926 338 aaKnown RBP12.01□□□□□ -0.49
SIX4-201ENST00000216513 MMDQ15546 238 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 ZNF703Q9H7S9 590 aaPredicted RBP12.01□□□□□ -0.49
SIX4-201ENST00000216513 B9A039 149 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 ZNF354AO60765 605 aaPredicted RBP12.01□□□□□ -0.49
SIX4-201ENST00000216513 HPNP05981 417 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 FLI1Q01543 452 aaPredicted RBP12.01□□□□□ -0.49
SIX4-201ENST00000216513 CENPVQ7Z7K6 275 aaPredicted RBP12.01□□□□□ -0.49
SIX4-201ENST00000216513 LOC105371242A0A075B767 164 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 CENPVL1A0A0U1RR11 272 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 COX7A2P2O60397 106 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 OR2B8PP59922 312 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 NAA40Q86UY6 237 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 SSC4DQ8WTU2 575 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 ERGIC1Q969X5 290 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 DHRS9Q9BPW9 319 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 GABARAPL3Q9BY60 117 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 CLCF1Q9UBD9 225 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 AK3Q9UIJ7 227 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 GVINP1Q7Z2Y8 2422 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 UMODP07911 640 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 C6orf201Q7Z4U5 140 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 OR5R1Q8NH85 324 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 NDFIP1Q9BT67 221 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 IL20Q9NYY1 176 aa12.01□□□□□ -0.49
SIX4-201ENST00000216513 COL10A1Q03692 680 aa12□□□□□ -0.49
SIX4-201ENST00000216513 SOHLH1Q5JUK2 328 aa12□□□□□ -0.49
SIX4-201ENST00000216513 CCDC144NLQ6NUI1 221 aa12□□□□□ -0.49
SIX4-201ENST00000216513 SKA3Q8IX90 412 aa12□□□□□ -0.49
SIX4-201ENST00000216513 ARHGEF39Q8N4T4 335 aa12□□□□□ -0.49
SIX4-201ENST00000216513 STARD10Q9Y365 291 aa12□□□□□ -0.49
SIX4-201ENST00000216513 J3KRW8 73 aa12□□□□□ -0.49
SIX4-201ENST00000216513 FOSL1P15407 271 aa12□□□□□ -0.49
SIX4-201ENST00000216513 CCR9P51686 369 aa12□□□□□ -0.49
SIX4-201ENST00000216513 KIAA0141Q14154 515 aaPredicted RBP12□□□□□ -0.49
SIX4-201ENST00000216513 LINC00303Q3SY05 128 aa12□□□□□ -0.49
SIX4-201ENST00000216513 FAM122CQ6P4D5 195 aa12□□□□□ -0.49
SIX4-201ENST00000216513 ZNF705AQ6ZN79 300 aaPredicted RBP12□□□□□ -0.49
SIX4-201ENST00000216513 ACOT7LQ6ZUV0 252 aa12□□□□□ -0.49
SIX4-201ENST00000216513 LRP11Q86VZ4 500 aa12□□□□□ -0.49
SIX4-201ENST00000216513 OR4C16Q8NGL9 310 aa12□□□□□ -0.49
SIX4-201ENST00000216513 MAP6Q96JE9 813 aa12□□□□□ -0.49
SIX4-201ENST00000216513 HSD17B10Q99714 261 aaKnown RBP12□□□□□ -0.49
SIX4-201ENST00000216513 PARP11Q9NR21 331 aa12□□□□□ -0.49
SIX4-201ENST00000216513 ZDHHC8Q9ULC8 765 aa12□□□□□ -0.49
SIX4-201ENST00000216513 PCDHGA9Q9Y5G4 932 aaKnown RBP12□□□□□ -0.49
SIX4-201ENST00000216513 MITD1Q8WV92 249 aa12□□□□□ -0.49
SIX4-201ENST00000216513 SYNGR3O43761 229 aa12□□□□□ -0.49
SIX4-201ENST00000216513 OR4F5Q8NH21 305 aa12□□□□□ -0.49
SIX4-201ENST00000216513 ADIPOR1Q96A54 375 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms