RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 HES4Q9HCC6 221 aa15.59■□□□□ 0.09
CLN3-254ENST00000637050 PDCD6O75340 191 aa15.58■□□□□ 0.08
CLN3-254ENST00000637050 CSF1P09603 554 aa15.58■□□□□ 0.08
CLN3-254ENST00000637050 IL13RA2Q14627 380 aa15.58■□□□□ 0.08
CLN3-254ENST00000637050 EFNB3Q15768 340 aa15.58■□□□□ 0.08
CLN3-254ENST00000637050 PCGF3Q3KNV8 242 aa15.58■□□□□ 0.08
CLN3-254ENST00000637050 NKAPLQ5M9Q1 402 aa15.58■□□□□ 0.08
CLN3-254ENST00000637050 DEDD2Q8WXF8 326 aa15.58■□□□□ 0.08
CLN3-254ENST00000637050 DIRC2Q96SL1 478 aa15.58■□□□□ 0.08
CLN3-254ENST00000637050 UFSP2Q9NUQ7 469 aa15.58■□□□□ 0.08
CLN3-254ENST00000637050 IL19Q9UHD0 177 aa15.58■□□□□ 0.08
CLN3-254ENST00000637050 ZNF107Q9UII5 783 aaPredicted RBP15.58■□□□□ 0.08
CLN3-254ENST00000637050 SMG1Q96Q15 3661 aaKnown RBP15.58■□□□□ 0.08
CLN3-254ENST00000637050 EPG5Q9HCE0 2579 aa15.58■□□□□ 0.08
CLN3-254ENST00000637050 OR7C1O76099 320 aaPredicted RBP15.57■□□□□ 0.08
CLN3-254ENST00000637050 IGFBP2P18065 325 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 FUT3P21217 361 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 CFHR2P36980 270 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 GATA4P43694 442 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 SNU13P55769 128 aaKnown RBP15.57■□□□□ 0.08
CLN3-254ENST00000637050 PDCD1Q15116 288 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 ZNF672Q499Z4 452 aaPredicted RBP15.57■□□□□ 0.08
CLN3-254ENST00000637050 SPRNQ5BIV9 151 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 ITLN1Q8WWA0 313 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 CISD1Q9NZ45 108 aaKnown RBP15.57■□□□□ 0.08
CLN3-254ENST00000637050 CENPXA8MT69 81 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 C3orf80F5H4A9 247 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 C19orf84I3L1E1 186 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 TPD52L2O43399 206 aaKnown RBP15.57■□□□□ 0.08
CLN3-254ENST00000637050 NXPH2O95156 264 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 TNFSF4P23510 183 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 BTCP35070 178 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 RCVRNP35243 200 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 PMELP40967 661 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 TNFAIP6P98066 277 aaPredicted RBP15.57■□□□□ 0.08
CLN3-254ENST00000637050 ARFRP1Q13795 201 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 CCBE1Q6UXH8 406 aaPredicted RBP15.57■□□□□ 0.08
CLN3-254ENST00000637050 FAM222BQ8WU58 562 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 DHRS9Q9BPW9 319 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 SULT4A1Q9BR01 284 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 OCSTAMPQ9BR26 566 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 FAAP24Q9BTP7 215 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 IFT22Q9H7X7 185 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 HRASLSQ9HDD0 168 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 C1orf123Q9NWV4 160 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 RCC2Q9P258 522 aaKnown RBP15.57■□□□□ 0.08
CLN3-254ENST00000637050 ANAPC10Q9UM13 185 aa15.57■□□□□ 0.08
CLN3-254ENST00000637050 C17orf100A8MU93 164 aa15.56■□□□□ 0.08
CLN3-254ENST00000637050 H3BUI4 141 aa15.56■□□□□ 0.08
CLN3-254ENST00000637050 M0R233 179 aa15.56■□□□□ 0.08
CLN3-254ENST00000637050 CD55P08174 381 aa15.56■□□□□ 0.08
CLN3-254ENST00000637050 MST1LQ2TV78 715 aa15.56■□□□□ 0.08
CLN3-254ENST00000637050 ZNF554Q86TJ5 538 aa15.56■□□□□ 0.08
CLN3-254ENST00000637050 TMEM229BQ8NBD8 167 aa15.56■□□□□ 0.08
CLN3-254ENST00000637050 DUSP18Q8NEJ0 188 aa15.56■□□□□ 0.08
CLN3-254ENST00000637050 OR10Z1Q8NGY1 313 aa15.56■□□□□ 0.08
CLN3-254ENST00000637050 FN3KRPQ9HA64 309 aa15.56■□□□□ 0.08
CLN3-254ENST00000637050 PLCE1Q9P212 2302 aa15.55■□□□□ 0.08
CLN3-254ENST00000637050 NAP1L6A6NFF2 107 aa15.55■□□□□ 0.08
CLN3-254ENST00000637050 B9A039 149 aa15.55■□□□□ 0.08
CLN3-254ENST00000637050 MT-ND4P03905 459 aa15.55■□□□□ 0.08
CLN3-254ENST00000637050 DUSP1P28562 367 aa15.55■□□□□ 0.08
CLN3-254ENST00000637050 SLC6A1P30531 599 aa15.55■□□□□ 0.08
CLN3-254ENST00000637050 CBX5P45973 191 aa15.55■□□□□ 0.08
CLN3-254ENST00000637050 IKZF1Q13422 519 aa15.55■□□□□ 0.08
CLN3-254ENST00000637050 ZNF146Q15072 292 aa15.55■□□□□ 0.08
CLN3-254ENST00000637050 ATAD3CQ5T2N8 411 aa15.55■□□□□ 0.08
CLN3-254ENST00000637050 GVQW1Q8N7I0 195 aa15.55■□□□□ 0.08
CLN3-254ENST00000637050 ENKURQ8TC29 256 aa15.55■□□□□ 0.08
CLN3-254ENST00000637050 FBXW5Q969U6 566 aa15.55■□□□□ 0.08
CLN3-254ENST00000637050 PLEKHA6Q9Y2H5 1048 aa15.55■□□□□ 0.08
CLN3-254ENST00000637050 FAM240BA0A1B0GVZ2 78 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 hCG_1807616A0A1W2PRN6 198 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 NAT1P18440 290 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 TAS2R19P59542 299 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 CBX3Q13185 183 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 SPIN3Q5JUX0 258 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 MOGAT3Q86VF5 341 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 LRRC29Q8WV35 223 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 ERGIC1Q969X5 290 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 WDR13Q9H1Z4 485 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 SPACA1Q9HBV2 294 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 IFT46Q9NQC8 304 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 AK3Q9UIJ7 227 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 WNT9BO14905 357 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 CD74P04233 296 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 CD3DP04234 171 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 FCER2P06734 321 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 AKAIN1P0CW23 69 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 PLA1AQ53H76 456 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 Q6P435 159 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 BRICD5Q6PL45 260 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 FIP1L1Q6UN15 594 aaKnown RBP15.54■□□□□ 0.08
CLN3-254ENST00000637050 ACP7Q6ZNF0 438 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 GCM1Q9NP62 436 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 RASL12Q9NYN1 266 aa15.54■□□□□ 0.08
CLN3-254ENST00000637050 ZFYVE26Q68DK2 2539 aa15.53■□□□□ 0.08
CLN3-254ENST00000637050 ANKHD1Q8IWZ3 2542 aaKnown RBP15.53■□□□□ 0.08
CLN3-254ENST00000637050 SRRM5B3KS81 715 aa15.53■□□□□ 0.08
CLN3-254ENST00000637050 ZNF736B4DX44 427 aaPredicted RBP15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms