RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 ELP2Q6IA86 826 aa15.9■□□□□ 0.14
SQSTM1-216ENST00000626660 ZNF841Q6ZN19 808 aa15.9■□□□□ 0.14
SQSTM1-216ENST00000626660 ZNF561Q8N587 486 aa15.9■□□□□ 0.14
SQSTM1-216ENST00000626660 CD177Q8N6Q3 437 aa15.9■□□□□ 0.14
SQSTM1-216ENST00000626660 ST8SIA4Q92187 359 aa15.9■□□□□ 0.14
SQSTM1-216ENST00000626660 TMEM186Q96B77 213 aa15.9■□□□□ 0.14
SQSTM1-216ENST00000626660 SDSLQ96GA7 329 aa15.9■□□□□ 0.14
SQSTM1-216ENST00000626660 CHCHD6Q9BRQ6 235 aa15.9■□□□□ 0.14
SQSTM1-216ENST00000626660 OR51E2Q9H255 320 aa15.9■□□□□ 0.14
SQSTM1-216ENST00000626660 GSX1Q9H4S2 264 aaPredicted RBP15.9■□□□□ 0.14
SQSTM1-216ENST00000626660 TXNL4BQ9NX01 149 aaKnown RBP15.9■□□□□ 0.14
SQSTM1-216ENST00000626660 IL36GQ9NZH8 169 aa15.9■□□□□ 0.14
SQSTM1-216ENST00000626660 KCNS2Q9ULS6 477 aa15.9■□□□□ 0.14
SQSTM1-216ENST00000626660 SONP18583 2426 aaKnown RBP15.89■□□□□ 0.13
SQSTM1-216ENST00000626660 LOC100506127A0A0U1RQW1 187 aa15.89■□□□□ 0.13
SQSTM1-216ENST00000626660 TFF1P04155 84 aa15.89■□□□□ 0.13
SQSTM1-216ENST00000626660 CHRM2P08172 466 aa15.89■□□□□ 0.13
SQSTM1-216ENST00000626660 ZFP36P26651 326 aaKnown RBP15.89■□□□□ 0.13
SQSTM1-216ENST00000626660 CEBPDP49716 269 aaPredicted RBP15.89■□□□□ 0.13
SQSTM1-216ENST00000626660 FGF12P61328 243 aa15.89■□□□□ 0.13
SQSTM1-216ENST00000626660 SLC22A6Q4U2R8 563 aa15.89■□□□□ 0.13
SQSTM1-216ENST00000626660 GLIPR1L1Q6UWM5 242 aa15.89■□□□□ 0.13
SQSTM1-216ENST00000626660 TMEM185AQ8NFB2 350 aa15.89■□□□□ 0.13
SQSTM1-216ENST00000626660 OR10K1Q8NGX5 313 aa15.89■□□□□ 0.13
SQSTM1-216ENST00000626660 SEBOXQ9HB31 216 aaPredicted RBP15.89■□□□□ 0.13
SQSTM1-216ENST00000626660 PLGRKTQ9HBL7 147 aa15.89■□□□□ 0.13
SQSTM1-216ENST00000626660 HIF1ANQ9NWT6 349 aa15.89■□□□□ 0.13
SQSTM1-216ENST00000626660 SLC25A10Q9UBX3 287 aaPredicted RBP15.89■□□□□ 0.13
SQSTM1-216ENST00000626660 POLR3KQ9Y2Y1 108 aaPredicted RBP15.89■□□□□ 0.13
SQSTM1-216ENST00000626660 AK6Q9Y3D8 172 aaKnown RBP15.89■□□□□ 0.13
SQSTM1-216ENST00000626660 A0A1B0GW55 424 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 A8MV72 311 aaPredicted RBP15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 KIAA1324LA8MWY0 1029 aaPredicted RBP15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 SH2D1BO14796 132 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 GPR37O15354 613 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 HAND1O96004 215 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 DUX4L2P0CJ85 424 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 DUX4L3P0CJ86 424 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 DUX4L4P0CJ87 422 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 DUX4L5P0CJ88 424 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 DUX4L6P0CJ89 424 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 DUX4L7P0CJ90 424 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 RANBP1P43487 201 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 ZNF146Q15072 292 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 DGUOKQ16854 277 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 C11orf91Q3C1V1 193 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 C1orf100Q5SVJ3 147 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 DUX4L9Q6RFH8 374 aaPredicted RBP15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 GDPGP1Q6ZNW5 385 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 LYPD6Q86Y78 171 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 OR4D6Q8NGJ1 314 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 OR6M1Q8NGM8 313 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 TBC1D15Q8TC07 691 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 KCTD7Q96MP8 289 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 IL36RNQ9UBH0 155 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 GHRLQ9UBU3 117 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 DUX4Q9UBX2 424 aa15.88■□□□□ 0.13
SQSTM1-216ENST00000626660 LOC105371242A0A075B767 164 aa15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 PPIAL4CA0A0B4J2A2 164 aa15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 A0A0G2JMP0 313 aa15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 A0A0X1KG70 313 aa15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 ECDO95905 644 aaPredicted RBP15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 UBBP0CG47 229 aa15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 SELLP14151 372 aa15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 NDUFB7P17568 137 aa15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 SERPINA2P20848 420 aa15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 GATA3P23771 443 aa15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 HTR2CP28335 458 aa15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 DUSP1P28562 367 aa15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 COL10A1Q03692 680 aa15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 OSR2Q8N2R0 312 aa15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 ASCC1Q8N9N2 400 aaKnown RBP15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 ZNRF1Q8ND25 227 aa15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 Q8NFD4 153 aa15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 OR4M2Q8NGB6 313 aa15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 YIPF6Q96EC8 236 aa15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 MAB21L2Q9Y586 359 aa15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 V9GY05 133 aa15.87■□□□□ 0.13
SQSTM1-216ENST00000626660 SLC17A2O00624 439 aa15.86■□□□□ 0.13
SQSTM1-216ENST00000626660 AIREO43918 545 aa15.86■□□□□ 0.13
SQSTM1-216ENST00000626660 CD37P11049 281 aa15.86■□□□□ 0.13
SQSTM1-216ENST00000626660 GTF2F2P13984 249 aa15.86■□□□□ 0.13
SQSTM1-216ENST00000626660 RAB3BP20337 219 aa15.86■□□□□ 0.13
SQSTM1-216ENST00000626660 CAV3P56539 151 aa15.86■□□□□ 0.13
SQSTM1-216ENST00000626660 IL13RA2Q14627 380 aa15.86■□□□□ 0.13
SQSTM1-216ENST00000626660 RAB11BQ15907 218 aa15.86■□□□□ 0.13
SQSTM1-216ENST00000626660 DCAF12L2Q5VW00 463 aa15.86■□□□□ 0.13
SQSTM1-216ENST00000626660 BTNL3Q6UXE8 466 aa15.86■□□□□ 0.13
SQSTM1-216ENST00000626660 Q71RC1 249 aaPredicted RBP15.86■□□□□ 0.13
SQSTM1-216ENST00000626660 OR51T1Q8NGJ9 327 aa15.86■□□□□ 0.13
SQSTM1-216ENST00000626660 OR13F1Q8NGS4 319 aa15.86■□□□□ 0.13
SQSTM1-216ENST00000626660 H1FXQ92522 213 aaKnown RBP15.86■□□□□ 0.13
SQSTM1-216ENST00000626660 FAM234AQ9H0X4 552 aa15.86■□□□□ 0.13
SQSTM1-216ENST00000626660 METRNQ9UJH8 293 aa15.86■□□□□ 0.13
SQSTM1-216ENST00000626660 DEGS1O15121 323 aa15.85■□□□□ 0.13
SQSTM1-216ENST00000626660 SLC22A1O15245 554 aa15.85■□□□□ 0.13
SQSTM1-216ENST00000626660 ENSAO43768 121 aaKnown RBP15.85■□□□□ 0.13
SQSTM1-216ENST00000626660 ZNF44P15621 663 aa15.85■□□□□ 0.13
SQSTM1-216ENST00000626660 GABRR1P24046 479 aa15.85■□□□□ 0.13
SQSTM1-216ENST00000626660 SCN1BQ07699 218 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms