RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 NTN1O95631 604 aa10.04□□□□□ -0.8
CLIP1-219ENST00000620786 RSPO4Q2I0M5 234 aaPredicted RBP10.04□□□□□ -0.8
CLIP1-219ENST00000620786 LINC00303Q3SY05 128 aa10.04□□□□□ -0.8
CLIP1-219ENST00000620786 FFAR4Q5NUL3 377 aa10.04□□□□□ -0.8
CLIP1-219ENST00000620786 H3F3CQ6NXT2 135 aa10.04□□□□□ -0.8
CLIP1-219ENST00000620786 SMIM4Q8WVI0 70 aa10.04□□□□□ -0.8
CLIP1-219ENST00000620786 DOK5Q9P104 306 aa10.04□□□□□ -0.8
CLIP1-219ENST00000620786 CLN8Q9UBY8 286 aa10.04□□□□□ -0.8
CLIP1-219ENST00000620786 DLL1O00548 723 aa10.04□□□□□ -0.8
CLIP1-219ENST00000620786 HOXD4P09016 255 aaPredicted RBP10.04□□□□□ -0.8
CLIP1-219ENST00000620786 OR2B8PP59922 312 aa10.04□□□□□ -0.8
CLIP1-219ENST00000620786 ENDOGQ14249 297 aaKnown RBP10.04□□□□□ -0.8
CLIP1-219ENST00000620786 ADTRPQ96IZ2 230 aa10.04□□□□□ -0.8
CLIP1-219ENST00000620786 NTN4Q9HB63 628 aa10.04□□□□□ -0.8
CLIP1-219ENST00000620786 CA10Q9NS85 328 aa10.04□□□□□ -0.8
CLIP1-219ENST00000620786 RYDENQ9NUL5 291 aaKnown RBP10.04□□□□□ -0.8
CLIP1-219ENST00000620786 COL5A3P25940 1745 aaPredicted RBP10.04□□□□□ -0.8
CLIP1-219ENST00000620786 TRBV23-1A0A0A0MS06 115 aa10.04□□□□□ -0.8
CLIP1-219ENST00000620786 ZFPL1O95159 310 aa10.04□□□□□ -0.8
CLIP1-219ENST00000620786 CLDN20P56880 219 aa10.04□□□□□ -0.8
CLIP1-219ENST00000620786 OR4S2Q8NH73 311 aa10.04□□□□□ -0.8
CLIP1-219ENST00000620786 OR1A1Q9P1Q5 309 aa10.04□□□□□ -0.8
CLIP1-219ENST00000620786 COL11A2P13942 1736 aaPredicted RBP10.03□□□□□ -0.8
CLIP1-219ENST00000620786 NTF3P20783 257 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 FHL5Q5TD97 284 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 ZNF705AQ6ZN79 300 aaPredicted RBP10.03□□□□□ -0.8
CLIP1-219ENST00000620786 C14orf79Q96F83 325 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 PECRQ9BY49 303 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 CTDSP1Q9GZU7 261 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 TMEM231Q9H6L2 316 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 TMEM38BQ9NVV0 291 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 CELA2AP08217 269 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 FAM3AP98173 230 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 FAHD2BQ6P2I3 314 aaPredicted RBP10.03□□□□□ -0.8
CLIP1-219ENST00000620786 PPP1R1CQ8WVI7 109 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 FAHD2AQ96GK7 314 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 WDR61Q9GZS3 305 aaKnown RBP10.03□□□□□ -0.8
CLIP1-219ENST00000620786 SLC25A22Q9H936 323 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 ARG1P05089 322 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 FCER1GP30273 86 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 CD80P33681 288 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 NAAAQ02083 359 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 SLC38A11Q08AI6 406 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.03□□□□□ -0.8
CLIP1-219ENST00000620786 SSX8Q7RTT4 187 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 FAM122BQ7Z309 247 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 GAR1Q9NY12 217 aaKnown RBP10.03□□□□□ -0.8
CLIP1-219ENST00000620786 CDC42EP2O14613 210 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 FOXS1O43638 330 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 PLPP2O43688 288 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 ADRA2AP08913 450 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 OR1B1Q8NGR6 318 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 SNCGO76070 127 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 C1QBP02746 253 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 GDF15Q99988 308 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 LIPGQ9Y5X9 500 aa10.03□□□□□ -0.8
CLIP1-219ENST00000620786 URB1O60287 2271 aaKnown RBP10.02□□□□□ -0.8
CLIP1-219ENST00000620786 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.02□□□□□ -0.8
CLIP1-219ENST00000620786 OR1L4Q8NGR5 311 aa10.02□□□□□ -0.8
CLIP1-219ENST00000620786 VSTM2AQ8TAG5 236 aa10.02□□□□□ -0.8
CLIP1-219ENST00000620786 SAP25Q8TEE9 199 aa10.02□□□□□ -0.8
CLIP1-219ENST00000620786 CES1P1Q9UKY3 287 aa10.02□□□□□ -0.8
CLIP1-219ENST00000620786 PYCARD-AS1I3L0S3 204 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 ORM2P19652 201 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 ADAM5Q6NVV9 412 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 CACNG5Q9UF02 275 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 COL4A5P29400 1685 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 TMEM210A6NLX4 147 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 ZNF716A6NP11 495 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 ERVFC1-1P60608 527 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 INSL4Q14641 139 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 NCR3LG1Q68D85 454 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 MSL2Q9HCI7 577 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 TMEFF2Q9UIK5 374 aaPredicted RBP10.02□□□□□ -0.81
CLIP1-219ENST00000620786 TMED3Q9Y3Q3 217 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 INSIG2Q9Y5U4 225 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 TRDCB7Z8K6 153 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 G3V3Q6 166 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 ACSM4P0C7M7 580 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 PTHLHP12272 177 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 MESP2Q0VG99 397 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 ZBTB37Q5TC79 503 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 LRRTM1Q86UE6 522 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 ZDHHC22Q8N966 263 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 TMUB1Q9BVT8 246 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 CHODLQ9H9P2 273 aa10.02□□□□□ -0.81
CLIP1-219ENST00000620786 BGLAPP02818 100 aa10.01□□□□□ -0.81
CLIP1-219ENST00000620786 PMELP40967 661 aa10.01□□□□□ -0.81
CLIP1-219ENST00000620786 ECSCRQ19T08 205 aa10.01□□□□□ -0.81
CLIP1-219ENST00000620786 DGAT2L6Q6ZPD8 337 aa10.01□□□□□ -0.81
CLIP1-219ENST00000620786 ZNF385DQ9H6B1 395 aa10.01□□□□□ -0.81
CLIP1-219ENST00000620786 SLC25A10Q9UBX3 287 aaPredicted RBP10.01□□□□□ -0.81
CLIP1-219ENST00000620786 QSER1Q2KHR3 1735 aa10.01□□□□□ -0.81
CLIP1-219ENST00000620786 PPIAL4EA0A075B759 164 aa10.01□□□□□ -0.81
CLIP1-219ENST00000620786 C9orf172C9J069 976 aa10.01□□□□□ -0.81
CLIP1-219ENST00000620786 PPIAL4DF5H284 164 aa10.01□□□□□ -0.81
CLIP1-219ENST00000620786 PPIAL4FP0DN26 164 aa10.01□□□□□ -0.81
CLIP1-219ENST00000620786 TGIF2LYQ8IUE0 185 aa10.01□□□□□ -0.81
CLIP1-219ENST00000620786 TGIF2LXQ8IUE1 241 aa10.01□□□□□ -0.81
CLIP1-219ENST00000620786 SLC25A45Q8N413 288 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms