RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 ZNF558Q96NG5 402 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 OSER1Q9NX31 292 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 KIR2DS1A0A191URI9 304 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 FGF17O60258 216 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 WNT11O96014 354 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 KIR2DS4P43632 304 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 H2BFSP57053 126 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 KIR2DS1Q14954 304 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 SLC35G1Q2M3R5 365 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 CD200R1LQ6Q8B3 271 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 MRPL21Q7Z2W9 205 aaKnown RBP4.43□□□□□ -1.7
VPS13D-213ENST00000613099 LCORQ96JN0 433 aaPredicted RBP4.43□□□□□ -1.7
VPS13D-213ENST00000613099 GTSF1LQ9H1H1 148 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 MTCH1Q9NZJ7 389 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 TBL2Q9Y4P3 447 aaKnown RBP4.43□□□□□ -1.7
VPS13D-213ENST00000613099 DENND4CQ5VZ89 1909 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 MPDZO75970 2070 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 CDC14CA4D256 554 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 RBFOX2O43251 390 aaKnown RBP eCLIP4.43□□□□□ -1.75e-8■□□□□ 8.9
VPS13D-213ENST00000613099 PF4V1P10720 104 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 TRA2AQ13595 282 aaKnown RBP eCLIP4.43□□□□□ -1.73e-6■□□□□ 8.6
VPS13D-213ENST00000613099 PRTGQ2VWP7 1150 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 ZFYVE21Q9BQ24 234 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 LMF2Q9BU23 707 aaKnown RBP4.43□□□□□ -1.7
VPS13D-213ENST00000613099 SNHG12Q9BXW3 62 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 SPCS1Q9Y6A9 102 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 RALGAPA1Q6GYQ0 2036 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 TRAV9-1A0A075B6T8 112 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 TRAV27A0A087WT01 109 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 IGLON5A6NGN9 336 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 PRR35P0CG20 571 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 A6NNC1 897 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 MLC1Q15049 377 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 PWWP2BQ6NUJ5 590 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 TMEM136Q6ZRR5 245 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 NPWQ8N729 165 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 ADTRPQ96IZ2 230 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 CLN8Q9UBY8 286 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 TCRBV5S1A1TA0A578 114 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 IDSB3KWA1 339 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 SLCO2B1O94956 709 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 CLRN1P58418 232 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 WBP2NLQ6ICG8 309 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 C10orf126Q8N4M7 172 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 CDRT4Q8N9R6 151 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 CYSLTR1Q9Y271 337 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 MYO18BQ8IUG5 2567 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 SBK3P0C264 359 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 GPRIN1Q7Z2K8 1008 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 PLSCR2Q9NRY7 297 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 ZNF835Q9Y2P0 537 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 YBX2Q9Y2T7 364 aaKnown RBP4.43□□□□□ -1.7
VPS13D-213ENST00000613099 AKAP6Q13023 2319 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 MPZL1O95297 269 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 METAP1P53582 386 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 MMDQ15546 238 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 TMEM30BQ3MIR4 351 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 COPS9Q8WXC6 57 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 MESP1Q9BRJ9 268 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 TMEM106BQ9NUM4 274 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 C17orf105B2RV13 164 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 BMPR1BO00238 502 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 LY6KQ17RY6 165 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 TMEM144Q7Z5S9 345 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 TIMP4Q99727 224 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 NRSN2Q9GZP1 204 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 SLC5A6Q9Y289 635 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 ESPL1Q14674 2120 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 OR4C45A6NMZ5 311 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 HYAL3O43820 417 aaPredicted RBP4.43□□□□□ -1.7
VPS13D-213ENST00000613099 PITX3O75364 302 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 IGHA2P01877 340 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 HLA-DQA1P01909 254 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 CT45A6P0DMU7 189 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 CT45A5P0DMU8 189 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 CT45A7P0DMV0 189 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 MPLP40238 635 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 FOXL2P58012 376 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 NSDHLQ15738 373 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 CT45A1Q5HYN5 189 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 PLAC9Q5JTB6 97 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 GLIPR1L1Q6UWM5 242 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 GBGT1Q8N5D6 347 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 APCDD1LQ8NCL9 501 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 DMBX1Q8NFW5 382 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 CT45A3Q8NHU0 189 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 ARRDC3Q96B67 414 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 VN1R3Q9BXE9 311 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 SLC45A2Q9UMX9 530 aa4.43□□□□□ -1.7
VPS13D-213ENST00000613099 FITM1A5D6W6 292 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 FAM72CH0Y354 149 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 FURINP09958 794 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 SLC25A1P53007 311 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 FAM72AQ5TYM5 149 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 FAM69BQ5VUD6 431 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 FAM72DQ6L9T8 149 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 FAM72BQ86X60 149 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 CPEB1Q9BZB8 566 aaKnown RBP4.42□□□□□ -1.7
VPS13D-213ENST00000613099 VDAC3Q9Y277 283 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms