RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 RBBP9O75884 186 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 LHBP01229 141 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 CD8AP01732 235 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 MELTFP08582 738 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 HIST1H1DP16402 221 aaKnown RBP12.86□□□□□ -0.35
TRIM28-209ENST00000597423 GNG2P59768 71 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 MRPS11P82912 194 aaKnown RBP12.86□□□□□ -0.35
TRIM28-209ENST00000597423 SCN1BQ07699 218 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 IKZF1Q13422 519 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 MADCAM1Q13477 382 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 ARFRP1Q13795 201 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 RBM39Q14498 530 aaKnown RBP12.86□□□□□ -0.35
TRIM28-209ENST00000597423 ZNF146Q15072 292 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 ZNF79Q15937 498 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 HFEQ30201 348 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 PIGYQ3MUY2 71 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 ZNF260Q3ZCT1 412 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 ATAD3CQ5T2N8 411 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 ACP7Q6ZNF0 438 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 ZCCHC24Q8N2G6 241 aaKnown RBP12.86□□□□□ -0.35
TRIM28-209ENST00000597423 NICN1Q9BSH3 213 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 THAP7Q9BT49 309 aaPredicted RBP12.86□□□□□ -0.35
TRIM28-209ENST00000597423 IFT22Q9H7X7 185 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.86□□□□□ -0.35
TRIM28-209ENST00000597423 DLL4Q9NR61 685 aa12.86□□□□□ -0.35
TRIM28-209ENST00000597423 A0A0A6YYD4 124 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 H7C417 338 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 UPK1BO75841 260 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 SOD3P08294 240 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 MUC1P15941 1255 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-209ENST00000597423 GNB3P16520 340 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 CBX5P45973 191 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 SNU13P55769 128 aaKnown RBP12.85□□□□□ -0.35
TRIM28-209ENST00000597423 TMEM50BP56557 158 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 DEFA1P59665 94 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 DEFA3P59666 94 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 GMFBP60983 142 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 SSBP1Q04837 148 aaKnown RBP12.85□□□□□ -0.35
TRIM28-209ENST00000597423 KCNJ8Q15842 424 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 MICBQ29980 383 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 MOGAT2Q3SYC2 334 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 NKAPLQ5M9Q1 402 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 C11orf71Q6IPW1 123 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 PEG10Q86TG7 708 aaKnown RBP12.85□□□□□ -0.35
TRIM28-209ENST00000597423 BIVMQ86UB2 503 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 BATF2Q8N1L9 274 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 BOLLQ8N9W6 283 aaKnown RBP12.85□□□□□ -0.35
TRIM28-209ENST00000597423 CCL17Q92583 94 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 ARHGAP5-AS1Q96IT6 56 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 CACNG6Q9BXT2 260 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 PECRQ9BY49 303 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 ABCB10Q9NRK6 738 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 TMEM106BQ9NUM4 274 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 TAS2R8Q9NYW2 309 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 NLKQ9UBE8 527 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 EDARQ9UNE0 448 aa12.85□□□□□ -0.35
TRIM28-209ENST00000597423 TRAV38-1A0A0B4J264 116 aa12.84□□□□□ -0.35
TRIM28-209ENST00000597423 ISPDA4D126 451 aa12.84□□□□□ -0.35
TRIM28-209ENST00000597423 ECDO95905 644 aaPredicted RBP12.84□□□□□ -0.35
TRIM28-209ENST00000597423 LPLP06858 475 aa12.84□□□□□ -0.35
TRIM28-209ENST00000597423 CD3GP09693 182 aa12.84□□□□□ -0.35
TRIM28-209ENST00000597423 ZNF44P15621 663 aa12.84□□□□□ -0.35
TRIM28-209ENST00000597423 AP3S2P59780 193 aa12.84□□□□□ -0.35
TRIM28-209ENST00000597423 GCSAMQ8N6F7 178 aa12.84□□□□□ -0.35
TRIM28-209ENST00000597423 PPP1R35Q8TAP8 253 aa12.84□□□□□ -0.35
TRIM28-209ENST00000597423 SMIM4Q8WVI0 70 aa12.84□□□□□ -0.35
TRIM28-209ENST00000597423 RDH5Q92781 318 aa12.84□□□□□ -0.35
TRIM28-209ENST00000597423 C14orf79Q96F83 325 aa12.84□□□□□ -0.35
TRIM28-209ENST00000597423 RIMS4Q9H426 269 aaPredicted RBP12.84□□□□□ -0.35
TRIM28-209ENST00000597423 WIPI2Q9Y4P8 454 aa12.84□□□□□ -0.35
TRIM28-209ENST00000597423 RELNP78509 3460 aa12.84□□□□□ -0.35
TRIM28-209ENST00000597423 ADGRG4Q8IZF6 3080 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 PLCE1Q9P212 2302 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 FOXI3A8MTJ6 420 aaPredicted RBP12.83□□□□□ -0.36
TRIM28-209ENST00000597423 TMEM178BH3BS89 294 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 H7C1Q1 480 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 MFNGO00587 321 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 WNT9BO14905 357 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 HAND1O96004 215 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 IL7P13232 177 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 CHATP28329 748 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 DUSP1P28562 367 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 SSTR2P30874 369 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 PRDX2P32119 198 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 ACTBP60709 375 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 ACTG1P63261 375 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 SPRNQ5BIV9 151 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 PLAC9Q5JTB6 97 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 NEK7Q8TDX7 302 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 SEH1LQ96EE3 360 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 FAAP24Q9BTP7 215 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 WDR13Q9H1Z4 485 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 PLEKHF2Q9H8W4 249 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 ZMAT3Q9HA38 289 aaKnown RBP12.83□□□□□ -0.36
TRIM28-209ENST00000597423 OR14J1Q9UGF5 321 aa12.83□□□□□ -0.36
TRIM28-209ENST00000597423 PPIAL4EA0A075B759 164 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 A0A1W2PPR1 153 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 TMEM235A6NFC5 223 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 OOEPA6NGQ2 149 aa12.82□□□□□ -0.36
TRIM28-209ENST00000597423 RFPL4AA6NLU0 287 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 877.7 ms