RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 ETV7Q9Y603 341 aa12.55□□□□□ -0.4
TRIM28-207ENST00000597136 ZFHX3Q15911 3703 aa12.55□□□□□ -0.4
TRIM28-207ENST00000597136 A0A1W2PP11 408 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 ISPDA4D126 451 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 FAM157AC9JC47 383 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 CTDSP2O14595 271 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 AKR7A2O43488 359 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 ZNF780AO75290 641 aaPredicted RBP12.54□□□□□ -0.4
TRIM28-207ENST00000597136 CLPXO76031 633 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 LHBP01229 141 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 IGHV4-31P0DP07 118 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 EGR1P18146 543 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 ERVK11-1P61568 191 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 UNC119Q13432 240 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 GPR176Q14439 515 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 SFRP4Q6FHJ7 346 aaPredicted RBP12.54□□□□□ -0.4
TRIM28-207ENST00000597136 ELP2Q6IA86 826 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 OR2W3Q7Z3T1 314 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 PEG10Q86TG7 708 aaKnown RBP12.54□□□□□ -0.4
TRIM28-207ENST00000597136 LRRC28Q86X40 367 aaPredicted RBP12.54□□□□□ -0.4
TRIM28-207ENST00000597136 BATF2Q8N1L9 274 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 POC1AQ8NBT0 407 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 DEFB108BQ8NET1 73 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 OR10Z1Q8NGY1 313 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 FAM46BQ96A09 425 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 TIMD4Q96H15 378 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 NRIP2Q9BQI9 281 aa12.54□□□□□ -0.4
TRIM28-207ENST00000597136 C6orf62Q9GZU0 229 aaPredicted RBP12.54□□□□□ -0.4
TRIM28-207ENST00000597136 RBFOX1Q9NWB1 397 aaKnown RBP12.54□□□□□ -0.4
TRIM28-207ENST00000597136 LRRC30A6NM36 301 aa12.53□□□□□ -0.4
TRIM28-207ENST00000597136 IFNL4K9M1U5 179 aa12.53□□□□□ -0.4
TRIM28-207ENST00000597136 CRTAPO75718 401 aaPredicted RBP12.53□□□□□ -0.4
TRIM28-207ENST00000597136 HTR3BO95264 441 aa12.53□□□□□ -0.4
TRIM28-207ENST00000597136 SERPINA2P20848 420 aa12.53□□□□□ -0.4
TRIM28-207ENST00000597136 CD80P33681 288 aa12.53□□□□□ -0.4
TRIM28-207ENST00000597136 EFNB2P52799 333 aa12.53□□□□□ -0.4
TRIM28-207ENST00000597136 GMFBP60983 142 aa12.53□□□□□ -0.4
TRIM28-207ENST00000597136 BTG1P62324 171 aa12.53□□□□□ -0.4
TRIM28-207ENST00000597136 CLEC9AQ6UXN8 241 aa12.53□□□□□ -0.4
TRIM28-207ENST00000597136 Q8IYB0 196 aa12.53□□□□□ -0.4
TRIM28-207ENST00000597136 SAMD12Q8N8I0 201 aa12.53□□□□□ -0.4
TRIM28-207ENST00000597136 OR11L1Q8NGX0 322 aa12.53□□□□□ -0.4
TRIM28-207ENST00000597136 LRRC29Q8WV35 223 aa12.53□□□□□ -0.4
TRIM28-207ENST00000597136 PTX4Q96A99 478 aa12.53□□□□□ -0.4
TRIM28-207ENST00000597136 MSI2Q96DH6 328 aaKnown RBP12.53□□□□□ -0.4
TRIM28-207ENST00000597136 CST11Q9H112 138 aa12.53□□□□□ -0.4
TRIM28-207ENST00000597136 BANF2Q9H503 90 aa12.53□□□□□ -0.4
TRIM28-207ENST00000597136 RHOFQ9HBH0 211 aa12.53□□□□□ -0.4
TRIM28-207ENST00000597136 PCDHB16Q9NRJ7 776 aa12.53□□□□□ -0.4
TRIM28-207ENST00000597136 RAB22AQ9UL26 194 aa12.53□□□□□ -0.4
TRIM28-207ENST00000597136 PPIAL4EA0A075B759 164 aa12.52□□□□□ -0.4
TRIM28-207ENST00000597136 PPIAL4DF5H284 164 aa12.52□□□□□ -0.4
TRIM28-207ENST00000597136 RGS5O15539 181 aa12.52□□□□□ -0.4
TRIM28-207ENST00000597136 HPGDSO60760 199 aa12.52□□□□□ -0.4
TRIM28-207ENST00000597136 CSTBP04080 98 aaKnown RBP12.52□□□□□ -0.4
TRIM28-207ENST00000597136 PPIAL4FP0DN26 164 aa12.52□□□□□ -0.4
TRIM28-207ENST00000597136 GTF2F2P13984 249 aa12.52□□□□□ -0.4
TRIM28-207ENST00000597136 IRF2P14316 349 aa12.52□□□□□ -0.4
TRIM28-207ENST00000597136 MGMTP16455 207 aa12.52□□□□□ -0.4
TRIM28-207ENST00000597136 LYPD2Q6UXB3 125 aa12.52□□□□□ -0.4
TRIM28-207ENST00000597136 BIVMQ86UB2 503 aa12.52□□□□□ -0.4
TRIM28-207ENST00000597136 SLC25A38Q96DW6 304 aa12.52□□□□□ -0.4
TRIM28-207ENST00000597136 GAL3ST1Q99999 423 aa12.52□□□□□ -0.4
TRIM28-207ENST00000597136 TMEM246Q9BRR3 403 aa12.52□□□□□ -0.4
TRIM28-207ENST00000597136 WDR13Q9H1Z4 485 aa12.52□□□□□ -0.4
TRIM28-207ENST00000597136 HES4Q9HCC6 221 aa12.52□□□□□ -0.4
TRIM28-207ENST00000597136 PPIAL4AQ9Y536 164 aa12.52□□□□□ -0.4
TRIM28-207ENST00000597136 NAV3Q8IVL0 2385 aa12.52□□□□□ -0.41
TRIM28-207ENST00000597136 IGHV3OR15-7A0A075B7D8 119 aa12.52□□□□□ -0.41
TRIM28-207ENST00000597136 SRRM5B3KS81 715 aa12.52□□□□□ -0.41
TRIM28-207ENST00000597136 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.52□□□□□ -0.41
TRIM28-207ENST00000597136 NXPH2O95156 264 aa12.52□□□□□ -0.41
TRIM28-207ENST00000597136 MPIG6BO95866 241 aa12.52□□□□□ -0.41
TRIM28-207ENST00000597136 IGHV2-5P01817 119 aa12.52□□□□□ -0.41
TRIM28-207ENST00000597136 RAB6AP20340 208 aa12.52□□□□□ -0.41
TRIM28-207ENST00000597136 UBE2NLQ5JXB2 153 aa12.52□□□□□ -0.41
TRIM28-207ENST00000597136 LAX1Q8IWV1 398 aa12.52□□□□□ -0.41
TRIM28-207ENST00000597136 C1orf87Q8N0U7 546 aa12.52□□□□□ -0.41
TRIM28-207ENST00000597136 FAM58AQ8N1B3 248 aa12.52□□□□□ -0.41
TRIM28-207ENST00000597136 OSR2Q8N2R0 312 aa12.52□□□□□ -0.41
TRIM28-207ENST00000597136 HPS1Q92902 700 aa12.52□□□□□ -0.41
TRIM28-207ENST00000597136 MRPS24Q96EL2 167 aaKnown RBP12.52□□□□□ -0.41
TRIM28-207ENST00000597136 TMEM59Q9BXS4 323 aa12.52□□□□□ -0.41
TRIM28-207ENST00000597136 MIXL1Q9H2W2 232 aa12.52□□□□□ -0.41
TRIM28-207ENST00000597136 ZNF665Q9H7R5 613 aa12.52□□□□□ -0.41
TRIM28-207ENST00000597136 HMG20AQ9NP66 347 aa12.52□□□□□ -0.41
TRIM28-207ENST00000597136 RHBDL2Q9NX52 303 aa12.52□□□□□ -0.41
TRIM28-207ENST00000597136 APOA1P02647 267 aa12.51□□□□□ -0.41
TRIM28-207ENST00000597136 TFF1P04155 84 aa12.51□□□□□ -0.41
TRIM28-207ENST00000597136 GLRA1P23415 457 aa12.51□□□□□ -0.41
TRIM28-207ENST00000597136 MDH2P40926 338 aaKnown RBP12.51□□□□□ -0.41
TRIM28-207ENST00000597136 FGF12P61328 243 aa12.51□□□□□ -0.41
TRIM28-207ENST00000597136 SEC61A1P61619 476 aaKnown RBP12.51□□□□□ -0.41
TRIM28-207ENST00000597136 RPS27AP62979 156 aaKnown RBP12.51□□□□□ -0.41
TRIM28-207ENST00000597136 CMTM4Q8IZR5 234 aa12.51□□□□□ -0.41
TRIM28-207ENST00000597136 OR51T1Q8NGJ9 327 aa12.51□□□□□ -0.41
TRIM28-207ENST00000597136 OR6Q1Q8NGQ2 317 aa12.51□□□□□ -0.41
TRIM28-207ENST00000597136 EMG1Q92979 244 aaKnown RBP12.51□□□□□ -0.41
TRIM28-207ENST00000597136 CMTM3Q96MX0 182 aa12.51□□□□□ -0.41
TRIM28-207ENST00000597136 SELENOIQ9C0D9 397 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms