RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 CRIP3Q6Q6R5 217 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 TMPRSS11AQ6ZMR5 421 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 RNF144BQ7Z419 303 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 C8orf59Q8N0T1 100 aaPredicted RBP12.35□□□□□ -0.43
TRIM28-205ENST00000595028 OR8H2Q8N162 312 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 FAM58AQ8N1B3 248 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 PNKDQ8N490 385 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 OR4M1Q8NGD0 313 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 OR5D18Q8NGL1 313 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 TBC1D15Q8TC07 691 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 SPACA5Q96QH8 159 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 SEBOXQ9HB31 216 aaPredicted RBP12.35□□□□□ -0.43
TRIM28-205ENST00000595028 NEK6Q9HC98 313 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 TNFRSF19Q9NS68 423 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 ZNRD1Q9P1U0 126 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 EXOSC1Q9Y3B2 195 aaKnown RBP12.35□□□□□ -0.43
TRIM28-205ENST00000595028 FAM96BQ9Y3D0 163 aa12.35□□□□□ -0.43
TRIM28-205ENST00000595028 NBEAL2Q6ZNJ1 2754 aa12.34□□□□□ -0.43
TRIM28-205ENST00000595028 IGKV1-12A0A0C4DH73 117 aa12.34□□□□□ -0.43
TRIM28-205ENST00000595028 A0A1W2PRD5 423 aa12.34□□□□□ -0.43
TRIM28-205ENST00000595028 A0A1W2PRF3 423 aa12.34□□□□□ -0.43
TRIM28-205ENST00000595028 A0A1W2PRM7 423 aa12.34□□□□□ -0.43
TRIM28-205ENST00000595028 TMEM82A0PJX8 343 aa12.34□□□□□ -0.43
TRIM28-205ENST00000595028 ANGPTL7O43827 346 aa12.34□□□□□ -0.43
TRIM28-205ENST00000595028 KDM4BO94953 1096 aa12.34□□□□□ -0.43
TRIM28-205ENST00000595028 ALX3O95076 343 aa12.34□□□□□ -0.43
TRIM28-205ENST00000595028 IGKV1D-12P01611 117 aa12.34□□□□□ -0.43
TRIM28-205ENST00000595028 IGHV4-59P01825 116 aa12.34□□□□□ -0.43
TRIM28-205ENST00000595028 PIPP12273 146 aaPredicted RBP12.34□□□□□ -0.43
TRIM28-205ENST00000595028 CCL3L1P16619 93 aa12.34□□□□□ -0.43
TRIM28-205ENST00000595028 PRKACAP17612 351 aa12.34□□□□□ -0.43
TRIM28-205ENST00000595028 SPIN3Q5JUX0 258 aa12.34□□□□□ -0.43
TRIM28-205ENST00000595028 SERPINA12Q8IW75 414 aa12.34□□□□□ -0.43
TRIM28-205ENST00000595028 OR5D14Q8NGL3 314 aa12.34□□□□□ -0.43
TRIM28-205ENST00000595028 TMEM80Q96HE8 168 aa12.34□□□□□ -0.43
TRIM28-205ENST00000595028 VCXQ9H320 206 aa12.34□□□□□ -0.43
TRIM28-205ENST00000595028 MEIOCA2RUB1 952 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 FAM181BA6NEQ2 426 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 HCKP08631 526 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 IER3P46695 156 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 SNU13P55769 128 aaKnown RBP12.33□□□□□ -0.44
TRIM28-205ENST00000595028 DLX6P56179 175 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 EDDM3BP56851 147 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 ZP1P60852 638 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 ACSM1Q08AH1 577 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 MED21Q13503 144 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 ZNF146Q15072 292 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 PRR31Q5SQ13 230 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 ASPHD2Q6ICH7 369 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 LAIR2Q6ISS4 152 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 C17orf107Q6ZR85 190 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 GDPD3Q7L5L3 318 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 TCF23Q7RTU1 214 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 SAXO1Q8IYX7 474 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 C11orf42Q8N5U0 333 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 OR52N1Q8NH53 320 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 GPR148Q8TDV2 347 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 FBLIM1Q8WUP2 373 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 TAF15Q92804 592 aaKnown RBP eCLIP12.33□□□□□ -0.44
TRIM28-205ENST00000595028 SMIM19Q96E16 107 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 SNX22Q96L94 193 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 DCLRE1BQ9H816 532 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 HMG20AQ9NP66 347 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 CLEC2DQ9UHP7 191 aa12.33□□□□□ -0.44
TRIM28-205ENST00000595028 SF3B6Q9Y3B4 125 aaKnown RBP12.33□□□□□ -0.44
TRIM28-205ENST00000595028 hCG_1809904A0A1W2PP81 198 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 A0A1W2PPE2 198 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 A0A1W2PR64 198 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 A0A1W2PRV1 198 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 EFCAB10A6NFE3 127 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 PAHP00439 452 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 LALBAP00709 142 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 CD2P06729 351 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 RAB3AP20336 220 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 GABRR1P24046 479 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 DUSP1P28562 367 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 SOX2P48431 317 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 ERVFRD-1P60508 538 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 RPL15P61313 204 aaKnown RBP12.32□□□□□ -0.44
TRIM28-205ENST00000595028 EDDM3AQ14507 147 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 KISS1Q15726 138 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 GRK1Q15835 563 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 MIDNQ504T8 468 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 ZNF529Q6P280 563 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 ZSCAN4Q8NAM6 433 aaPredicted RBP12.32□□□□□ -0.44
TRIM28-205ENST00000595028 OR51A2Q8NGJ7 313 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 DYRK2Q92630 601 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 GGHQ92820 318 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 CPNE2Q96FN4 548 aaPredicted RBP12.32□□□□□ -0.44
TRIM28-205ENST00000595028 DPAGT1Q9H3H5 408 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 RHOFQ9HBH0 211 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 EXOSC4Q9NPD3 245 aaKnown RBP12.32□□□□□ -0.44
TRIM28-205ENST00000595028 CHCHD3Q9NX63 227 aaKnown RBP12.32□□□□□ -0.44
TRIM28-205ENST00000595028 BABAM2Q9NXR7 383 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 TAS2R4Q9NYW5 299 aa12.32□□□□□ -0.44
TRIM28-205ENST00000595028 CNOT2Q9NZN8 540 aaKnown RBP12.32□□□□□ -0.44
TRIM28-205ENST00000595028 NKX1-2Q9UD57 310 aaPredicted RBP12.32□□□□□ -0.44
TRIM28-205ENST00000595028 SIRT4Q9Y6E7 314 aaPredicted RBP12.32□□□□□ -0.44
TRIM28-205ENST00000595028 C17orf98A8MV24 154 aa12.31□□□□□ -0.44
TRIM28-205ENST00000595028 SIRPB1O00241 398 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms