RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 IGHV4-39P01824 125 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 HOXB5P09067 269 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 PNMTP11086 282 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 CPMP14384 443 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 HIST1H1BP16401 226 aaKnown RBP3.6□□□□□ -1.83
LIG3-211ENST00000588713 RAB4AP20338 218 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 HOXA5P20719 270 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 NME2P22392 152 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 VAMP1P23763 118 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 FPR2P25090 351 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 CHATP28329 748 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 GRPRP30550 384 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 TLX1P31314 330 aaPredicted RBP3.6□□□□□ -1.83
LIG3-211ENST00000588713 CD80P33681 288 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 CEACAM6P40199 344 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 SULT1A1P50225 295 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 P2RY4P51582 365 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 RIDAP52758 137 aaKnown RBP3.6□□□□□ -1.83
LIG3-211ENST00000588713 PKIAP61925 76 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 SKP1P63208 163 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 FAM3AP98173 230 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 ROM1Q03395 351 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 COL10A1Q03692 680 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 RELQ04864 619 aaPredicted RBP3.6□□□□□ -1.83
LIG3-211ENST00000588713 SURF2Q15527 256 aaPredicted RBP3.6□□□□□ -1.83
LIG3-211ENST00000588713 OR7A5Q15622 319 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 FAM189A2Q15884 450 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 ZNF141Q15928 474 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 ZNF124Q15973 351 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 SCGB2B2Q4G0G5 96 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 BEX5Q5H9J7 111 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 WDR38Q5JTN6 314 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 LCE1DQ5T752 114 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 HIST2H3PS2Q5TEC6 136 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 EEF1A1P5Q5VTE0 462 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 TMEM225Q6GV28 225 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 HEPN1Q6WQI6 88 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 Q6ZRG5 221 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 RHOUQ7L0Q8 258 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 ZNF627Q7L945 461 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 SSX9Q7RTT3 188 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 DCXRQ7Z4W1 244 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 MDGA2Q7Z553 956 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 TRAPPC6BQ86SZ2 158 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 PEG10Q86TG7 708 aaKnown RBP3.6□□□□□ -1.83
LIG3-211ENST00000588713 HOGA1Q86XE5 327 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 CARFQ8N187 725 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 PRSS35Q8N3Z0 413 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 C2orf73Q8N5S3 287 aaPredicted RBP3.6□□□□□ -1.83
LIG3-211ENST00000588713 BOLLQ8N9W6 283 aaKnown RBP3.6□□□□□ -1.83
LIG3-211ENST00000588713 LRRC75AQ8NAA5 344 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 POC1AQ8NBT0 407 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 OR2L3Q8NG85 312 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 OR51L1Q8NGJ5 315 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 OR10R2Q8NGX6 335 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 OR6N2Q8NGY6 317 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 OR8S1Q8NH09 359 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 NUBPLQ8TB37 319 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 ZPLD1Q8TCW7 415 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 RNF128Q8TEB7 428 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 DVL3Q92997 716 aaPredicted RBP3.6□□□□□ -1.83
LIG3-211ENST00000588713 FAM46BQ96A09 425 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 RASD2Q96D21 266 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 GALNT14Q96FL9 552 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 CPNE2Q96FN4 548 aaPredicted RBP3.6□□□□□ -1.83
LIG3-211ENST00000588713 SCGB3A2Q96PL1 93 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 OR8B4Q96RC9 309 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 INTS14Q96SY0 518 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 NMNAT3Q96T66 252 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 SLC6A7Q99884 636 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 SYT3Q9BQG1 590 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 C2orf88Q9BSF0 95 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 NAA11Q9BSU3 229 aaPredicted RBP3.6□□□□□ -1.83
LIG3-211ENST00000588713 PBDC1Q9BVG4 233 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 HRH4Q9H3N8 390 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 KIR3DX1Q9H7L2 352 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 UNKLQ9H9P5 680 aaKnown RBP3.6□□□□□ -1.83
LIG3-211ENST00000588713 FKRPQ9H9S5 495 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 TAF9BQ9HBM6 251 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 FAM212BQ9NTI7 297 aaPredicted RBP3.6□□□□□ -1.83
LIG3-211ENST00000588713 KCNG2Q9UJ96 466 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 IKZF2Q9UKS7 526 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 STARD10Q9Y365 291 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 FAM96BQ9Y3D0 163 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 HEBP2Q9Y5Z4 205 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 COLEC10Q9Y6Z7 277 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 DSCAMO60469 2012 aa3.6□□□□□ -1.83
LIG3-211ENST00000588713 SNRNP200O75643 2136 aaKnown RBP3.59□□□□□ -1.83
LIG3-211ENST00000588713 A0A096LNT2 108 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 NPIPA5A0A0B4J1W7 369 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 A0A1B0GX78 115 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 hCG_1809904A0A1W2PP81 198 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 A0A1W2PR64 198 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 A0A1W2PRV1 198 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 BTBD17A6NE02 478 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 TMEM235A6NFC5 223 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 MSGN1A6NI15 193 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 FAM166BA8MTA8 275 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 UMAD1C9J7I0 102 aa3.59□□□□□ -1.83
LIG3-211ENST00000588713 NPIPA7E9PJI5 369 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms