RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 CACNG2Q9Y698 323 aa13.56□□□□□ -0.24
SS18-211ENST00000578954 USF3Q68DE3 2245 aa13.56□□□□□ -0.24
SS18-211ENST00000578954 CLDN25C9JDP6 229 aa13.55□□□□□ -0.24
SS18-211ENST00000578954 SOCS1O15524 211 aa13.55□□□□□ -0.24
SS18-211ENST00000578954 CYB5R3P00387 301 aaPredicted RBP13.55□□□□□ -0.24
SS18-211ENST00000578954 PAX1P15863 534 aa13.55□□□□□ -0.24
SS18-211ENST00000578954 VEGFCP49767 419 aa13.55□□□□□ -0.24
SS18-211ENST00000578954 EFNA4P52798 201 aa13.55□□□□□ -0.24
SS18-211ENST00000578954 TAS2R20P59543 309 aa13.55□□□□□ -0.24
SS18-211ENST00000578954 ZNF79Q15937 498 aa13.55□□□□□ -0.24
SS18-211ENST00000578954 TMEM69Q5SWH9 247 aa13.55□□□□□ -0.24
SS18-211ENST00000578954 PYHIN1Q6K0P9 492 aa13.55□□□□□ -0.24
SS18-211ENST00000578954 Q6P435 159 aa13.55□□□□□ -0.24
SS18-211ENST00000578954 FIP1L1Q6UN15 594 aaKnown RBP13.55□□□□□ -0.24
SS18-211ENST00000578954 YIPF5Q969M3 257 aa13.55□□□□□ -0.24
SS18-211ENST00000578954 CXorf56Q9H5V9 222 aa13.55□□□□□ -0.24
SS18-211ENST00000578954 ZNF701Q9NV72 531 aaPredicted RBP13.55□□□□□ -0.24
SS18-211ENST00000578954 HSF4Q9ULV5 492 aa13.55□□□□□ -0.24
SS18-211ENST00000578954 UTP20O75691 2785 aaKnown RBP13.55□□□□□ -0.24
SS18-211ENST00000578954 FABP12A6NFH5 140 aa13.54□□□□□ -0.24
SS18-211ENST00000578954 C3orf80F5H4A9 247 aa13.54□□□□□ -0.24
SS18-211ENST00000578954 H3BUI4 141 aa13.54□□□□□ -0.24
SS18-211ENST00000578954 LGALS8O00214 317 aa13.54□□□□□ -0.24
SS18-211ENST00000578954 MFNGO00587 321 aa13.54□□□□□ -0.24
SS18-211ENST00000578954 F12P00748 615 aaPredicted RBP13.54□□□□□ -0.24
SS18-211ENST00000578954 HLA-DQB1P01920 261 aa13.54□□□□□ -0.24
SS18-211ENST00000578954 MUC1P15941 1255 aaPredicted RBP13.54□□□□□ -0.24
SS18-211ENST00000578954 CHATP28329 748 aa13.54□□□□□ -0.24
SS18-211ENST00000578954 HOXA4Q00056 320 aaPredicted RBP13.54□□□□□ -0.24
SS18-211ENST00000578954 HFEQ30201 348 aa13.54□□□□□ -0.24
SS18-211ENST00000578954 ZNF787Q6DD87 383 aa13.54□□□□□ -0.24
SS18-211ENST00000578954 PHF21AQ96BD5 680 aa13.54□□□□□ -0.24
SS18-211ENST00000578954 WDR12Q9GZL7 423 aaKnown RBP13.54□□□□□ -0.24
SS18-211ENST00000578954 NLKQ9UBE8 527 aa13.54□□□□□ -0.24
SS18-211ENST00000578954 ZNF222Q9UK12 451 aa13.54□□□□□ -0.24
SS18-211ENST00000578954 OOEPA6NGQ2 149 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 CTDSPLO15194 276 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 PDCD6O75340 191 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 GLAP06280 429 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 MELTFP08582 738 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 HIST1H1DP16402 221 aaKnown RBP13.53□□□□□ -0.24
SS18-211ENST00000578954 GABRR1P24046 479 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 COL8A2P25067 703 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 LMO1P25800 156 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 BLVRBP30043 206 aaPredicted RBP13.53□□□□□ -0.24
SS18-211ENST00000578954 CD80P33681 288 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 RBMXP38159 391 aaKnown RBP13.53□□□□□ -0.24
SS18-211ENST00000578954 ZNF846Q147U1 533 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 ARL6IP1Q15041 203 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 ZNF260Q3ZCT1 412 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 PLAC9Q5JTB6 97 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 FAM201AQ5SY85 155 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 STUMQ69YW2 141 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 FAM131AQ6UXB0 335 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 IZUMO1Q8IYV9 350 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 C15orf40Q8WUR7 153 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 ST8SIA4Q92187 359 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 CCL17Q92583 94 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 RAB3CQ96E17 227 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 SEH1LQ96EE3 360 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 SRRQ9GZT4 340 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 AUNIPQ9H7T9 357 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 SPACA1Q9HBV2 294 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 TREM2Q9NZC2 230 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 ZNF581Q9P0T4 197 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 WIPI2Q9Y4P8 454 aa13.53□□□□□ -0.24
SS18-211ENST00000578954 SPG11Q96JI7 2443 aa13.52□□□□□ -0.24
SS18-211ENST00000578954 TRAV18A0A075B6X5 111 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 PPIAL4EA0A075B759 164 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 A0A0G2JMP0 313 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 A0A0X1KG70 313 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 OR2AT4A6NND4 320 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 PPIAL4DF5H284 164 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 CA11O75493 328 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 OR7C1O76099 320 aaPredicted RBP13.52□□□□□ -0.25
SS18-211ENST00000578954 HAND1O96004 215 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 GSTP1P09211 210 aaKnown RBP13.52□□□□□ -0.25
SS18-211ENST00000578954 PPIAL4FP0DN26 164 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 PSG2P11465 335 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 DAOP14920 347 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 FUT3P21217 361 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 CD40LGP29965 261 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 SNU13P55769 128 aaKnown RBP13.52□□□□□ -0.25
SS18-211ENST00000578954 GMFBP60983 142 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 MRPS10P82664 201 aaKnown RBP13.52□□□□□ -0.25
SS18-211ENST00000578954 IKZF1Q13422 519 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 IL18Q14116 193 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 DNM1P46Q6ZS02 220 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 Q6ZTK2 550 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 CHST4Q8NCG5 386 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 OR4M2Q8NGB6 313 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 ANGPTL6Q8NI99 470 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 ARHGAP5-AS1Q96IT6 56 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 ABHD1Q96SE0 405 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 SDHCQ99643 169 aaPredicted RBP13.52□□□□□ -0.25
SS18-211ENST00000578954 PECRQ9BY49 303 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 LIME1Q9H400 295 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 MYOZ1Q9NP98 299 aaPredicted RBP13.52□□□□□ -0.25
SS18-211ENST00000578954 DNAJB11Q9UBS4 358 aa13.52□□□□□ -0.25
SS18-211ENST00000578954 GLS2Q9UI32 602 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms