RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 DLL4Q9NR61 685 aa12.88□□□□□ -0.35
SS18-206ENST00000577572 UFSP2Q9NUQ7 469 aa12.88□□□□□ -0.35
SS18-206ENST00000577572 A0A0A6YYD4 124 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 A0A1W2PPR1 153 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 F8VVB4 439 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 F8VWA3 439 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 MFNGO00587 321 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 SH2D1BO14796 132 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 GEMIN2O14893 280 aaKnown RBP12.87□□□□□ -0.35
SS18-206ENST00000577572 SOCS1O15524 211 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 SOD3P08294 240 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 MUC1P15941 1255 aaPredicted RBP12.87□□□□□ -0.35
SS18-206ENST00000577572 LMO1P25800 156 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 CHATP28329 748 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 CBX5P45973 191 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 KCNJ3P48549 501 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 CCL8P80075 99 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 RBM39Q14498 530 aaKnown RBP12.87□□□□□ -0.35
SS18-206ENST00000577572 MOGAT2Q3SYC2 334 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 CDNFQ49AH0 187 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 ZNF826PQ6ZT77 177 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 GCSAMQ8N6F7 178 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 ST8SIA4Q92187 359 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 SDHCQ99643 169 aaPredicted RBP12.87□□□□□ -0.35
SS18-206ENST00000577572 NICN1Q9BSH3 213 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 RIMS4Q9H426 269 aaPredicted RBP12.87□□□□□ -0.35
SS18-206ENST00000577572 PLEKHF2Q9H8W4 249 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 UBTD1Q9HAC8 227 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 PLEKHJ1Q9NW61 149 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 TAS2R8Q9NYW2 309 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 TREM2Q9NZC2 230 aa12.87□□□□□ -0.35
SS18-206ENST00000577572 RBMX2Q9Y388 322 aaKnown RBP12.87□□□□□ -0.35
SS18-206ENST00000577572 IGHV1-69-2A0A0G2JMI3 117 aa12.86□□□□□ -0.35
SS18-206ENST00000577572 OR7C1O76099 320 aaPredicted RBP12.86□□□□□ -0.35
SS18-206ENST00000577572 LPLP06858 475 aa12.86□□□□□ -0.35
SS18-206ENST00000577572 GABRR1P24046 479 aa12.86□□□□□ -0.35
SS18-206ENST00000577572 KCNJ8Q15842 424 aa12.86□□□□□ -0.35
SS18-206ENST00000577572 PIGYQ3MUY2 71 aa12.86□□□□□ -0.35
SS18-206ENST00000577572 PLAC9Q5JTB6 97 aa12.86□□□□□ -0.35
SS18-206ENST00000577572 TEX36Q5VZQ5 186 aa12.86□□□□□ -0.35
SS18-206ENST00000577572 C16orf87Q6PH81 154 aa12.86□□□□□ -0.35
SS18-206ENST00000577572 GPX8Q8TED1 209 aa12.86□□□□□ -0.35
SS18-206ENST00000577572 ARHGAP5-AS1Q96IT6 56 aa12.86□□□□□ -0.35
SS18-206ENST00000577572 THAP7Q9BT49 309 aaPredicted RBP12.86□□□□□ -0.35
SS18-206ENST00000577572 DNTTIP1Q9H147 329 aa12.86□□□□□ -0.35
SS18-206ENST00000577572 ABCA4P78363 2273 aa12.86□□□□□ -0.35
SS18-206ENST00000577572 H7C1Q1 480 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 OVOL3O00110 214 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 DEGS1O15121 323 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 RBBP9O75884 186 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 ECDO95905 644 aaPredicted RBP12.85□□□□□ -0.35
SS18-206ENST00000577572 GSTT2BP0CG30 244 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 IL7P13232 177 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 SSTR2P30874 369 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 MDH2P40926 338 aaKnown RBP12.85□□□□□ -0.35
SS18-206ENST00000577572 AP3S2P59780 193 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 ACTBP60709 375 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 ACTG1P63261 375 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 PAX5Q02548 391 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 SCN1BQ07699 218 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 IKZF1Q13422 519 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 MICBQ29980 383 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 HFEQ30201 348 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 TRIQKQ629K1 86 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 SIGIRRQ6IA17 410 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 SNX29P2Q8IUI4 249 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 SETD6Q8TBK2 473 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 IGFBPL1Q8WX77 278 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 RDH5Q92781 318 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 ZNF488Q96MN9 340 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 VRK1Q99986 396 aaPredicted RBP12.85□□□□□ -0.35
SS18-206ENST00000577572 CACNG6Q9BXT2 260 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 PECRQ9BY49 303 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 CHST6Q9GZX3 395 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 TMEM106BQ9NUM4 274 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 NLKQ9UBE8 527 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 MTFP1Q9UDX5 166 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 LAMP3Q9UQV4 416 aa12.85□□□□□ -0.35
SS18-206ENST00000577572 ROS1P08922 2347 aa12.84□□□□□ -0.35
SS18-206ENST00000577572 LRRK2Q5S007 2527 aa12.84□□□□□ -0.35
SS18-206ENST00000577572 TRAV38-1A0A0B4J264 116 aa12.84□□□□□ -0.35
SS18-206ENST00000577572 MCRIP1C9JLW8 97 aa12.84□□□□□ -0.35
SS18-206ENST00000577572 TMEM178BH3BS89 294 aa12.84□□□□□ -0.35
SS18-206ENST00000577572 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.84□□□□□ -0.35
SS18-206ENST00000577572 J3QRK9 145 aa12.84□□□□□ -0.35
SS18-206ENST00000577572 LGALS8O00214 317 aa12.84□□□□□ -0.35
SS18-206ENST00000577572 NDUFA2O43678 99 aa12.84□□□□□ -0.35
SS18-206ENST00000577572 HAND1O96004 215 aa12.84□□□□□ -0.35
SS18-206ENST00000577572 CSF3P09919 207 aa12.84□□□□□ -0.35
SS18-206ENST00000577572 GNB3P16520 340 aa12.84□□□□□ -0.35
SS18-206ENST00000577572 GNG2P59768 71 aa12.84□□□□□ -0.35
SS18-206ENST00000577572 SRSF7Q16629 238 aaKnown RBP eCLIP12.84□□□□□ -0.35
SS18-206ENST00000577572 ATPAF1Q5TC12 328 aaPredicted RBP12.84□□□□□ -0.35
SS18-206ENST00000577572 Q6P435 159 aa12.84□□□□□ -0.35
SS18-206ENST00000577572 IZUMO1Q8IYV9 350 aa12.84□□□□□ -0.35
SS18-206ENST00000577572 OR8H2Q8N162 312 aa12.84□□□□□ -0.35
SS18-206ENST00000577572 ZCCHC24Q8N2G6 241 aaKnown RBP12.84□□□□□ -0.35
SS18-206ENST00000577572 C19orf18Q8NEA5 215 aa12.84□□□□□ -0.35
SS18-206ENST00000577572 PPP1R35Q8TAP8 253 aa12.84□□□□□ -0.35
SS18-206ENST00000577572 YIPF5Q969M3 257 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms