RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 SAA4P35542 130 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 INPP1P49441 399 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 IL5RAQ01344 420 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 MZT1Q08AG7 82 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 PRDX4Q13162 271 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 ASAH1Q13510 395 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 TAF13Q15543 124 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 GRK1Q15835 563 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 DMRTC1Q5HYR2 192 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 SLC35E4Q6ICL7 350 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 OR2T5Q6IEZ7 315 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 C1orf122Q6ZSJ8 110 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 SLC36A1Q7Z2H8 476 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 STX12Q86Y82 276 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 OR8H2Q8N162 312 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 PARP16Q8N5Y8 322 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 OR8B12Q8NGG6 310 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 OR52H1Q8NGJ2 320 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 OR2T29Q8NH02 315 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 OTOSQ8NHW6 89 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 NPRL2Q8WTW4 380 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 UFD1Q92890 307 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 CREB3L1Q96BA8 519 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 ST6GAL2Q96JF0 529 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 FEVQ99581 238 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 PAPOLGQ9BWT3 736 aaKnown RBP5.48□□□□□ -1.53
VPS53-213ENST00000572334 DNTTIP1Q9H147 329 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 DPAGT1Q9H3H5 408 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 DUSP21Q9H596 190 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 ELL3Q9HB65 397 aaPredicted RBP5.48□□□□□ -1.53
VPS53-213ENST00000572334 TCF7L1Q9HCS4 588 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 BRD7Q9NPI1 651 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 PCDHB16Q9NRJ7 776 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 KRT84Q9NSB2 600 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 UBQLN2Q9UHD9 624 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 ZNF391Q9UJN7 358 aa5.48□□□□□ -1.53
VPS53-213ENST00000572334 SAMHD1Q9Y3Z3 626 aaKnown RBP5.48□□□□□ -1.53
VPS53-213ENST00000572334 TMEM210A6NLX4 147 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 I3L521 148 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 M0R1W7 72 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 NDUFB3O43676 98 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 MPZL2O60487 215 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 INMTO95050 263 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 ACAA1P09110 424 aaPredicted RBP5.47□□□□□ -1.53
VPS53-213ENST00000572334 FBP1P09467 338 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 PSG2P11465 335 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 ZNF3P17036 446 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 MYL9P24844 172 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 HSD11B1P28845 292 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 NAA10P41227 235 aaPredicted RBP5.47□□□□□ -1.53
VPS53-213ENST00000572334 HOXA1P49639 335 aaPredicted RBP5.47□□□□□ -1.53
VPS53-213ENST00000572334 UBE2E1P51965 193 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 EFNB2P52799 333 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 GBX2P52951 348 aaPredicted RBP5.47□□□□□ -1.53
VPS53-213ENST00000572334 HCCSP53701 268 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 GP2P55259 537 aaKnown RBP5.47□□□□□ -1.53
VPS53-213ENST00000572334 CAV3P56539 151 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 GMFBP60983 142 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 GUCA2AQ02747 115 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 EMX1Q04741 257 aaPredicted RBP5.47□□□□□ -1.53
VPS53-213ENST00000572334 EGR3Q06889 387 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 CD300CQ08708 224 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 TBCEQ15813 527 aaPredicted RBP5.47□□□□□ -1.53
VPS53-213ENST00000572334 GFOD2Q3B7J2 385 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 BEAN1Q3B7T3 259 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 LRRC10Q5BKY1 277 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 TOR2AQ5JU69 321 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 CLLU1Q5K131 121 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 LCN1P1Q5VSP4 162 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 HACD4Q5VWC8 232 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 DHRS7BQ6IAN0 325 aaPredicted RBP5.47□□□□□ -1.53
VPS53-213ENST00000572334 TMPRSS11AQ6ZMR5 421 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 GDPD3Q7L5L3 318 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 SHFQ7M4L6 423 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 HS3ST5Q8IZT8 346 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 ZNRF1Q8ND25 227 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 BEND2Q8NDZ0 799 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 CSNK2A3Q8NEV1 391 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 BBS1Q8NFJ9 593 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 OR10G2Q8NGC3 310 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 PIFOQ8TCI5 191 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 PIGCQ92535 297 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 PPP1R14AQ96A00 147 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 PGAM5Q96HS1 289 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 MICU1Q9BPX6 476 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 TCEAL7Q9BRU2 100 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 MEGF9Q9H1U4 602 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 OR10A2Q9H208 303 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 OR51I2Q9H344 312 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 RGCCQ9H4X1 137 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 FAM206AQ9NX38 181 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 NLKQ9UBE8 527 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 SLC25A10Q9UBX3 287 aaPredicted RBP5.47□□□□□ -1.53
VPS53-213ENST00000572334 FBLN5Q9UBX5 448 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 KIF25Q9UIL4 384 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 SIGLEC9Q9Y336 463 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 PRELID3BQ9Y3B1 194 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 MPC1Q9Y5U8 109 aa5.47□□□□□ -1.53
VPS53-213ENST00000572334 LINC00854A0A1B0GVQ3 168 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 ARRDC5A6NEK1 342 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms