RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 CBLN2Q8IUK8 224 aa19.69■□□□□ 0.74
VPS53-211ENST00000571805 CT55Q8WUE5 264 aa19.69■□□□□ 0.74
VPS53-211ENST00000571805 PSMF1Q92530 271 aa19.69■□□□□ 0.74
VPS53-211ENST00000571805 CPNE4Q96A23 557 aaPredicted RBP19.69■□□□□ 0.74
VPS53-211ENST00000571805 C18orf12Q96KH6 178 aa19.69■□□□□ 0.74
VPS53-211ENST00000571805 SUCNR1Q9BXA5 334 aa19.69■□□□□ 0.74
VPS53-211ENST00000571805 SLC2A9Q9NRM0 540 aa19.69■□□□□ 0.74
VPS53-211ENST00000571805 SCGB1D2O95969 90 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 CYB561P49447 251 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 RBM11P57052 281 aaKnown RBP19.68■□□□□ 0.74
VPS53-211ENST00000571805 SSPNQ14714 243 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 PHLDA2Q53GA4 152 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 LIAT1Q6ZQX7 453 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 ERGIC1Q969X5 290 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 ZNF286AQ9HBT8 521 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 PARP11Q9NR21 331 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 DOCK10Q96BY6 2186 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 SHANK1Q9Y566 2161 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 H7C1Q1 480 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 XRCC2O43543 280 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 F10P00742 488 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 SERPINA7P05543 415 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 NPBWR1P48145 328 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 MALLQ13021 153 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 HFEQ30201 348 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 HAGHLQ6PII5 290 aaPredicted RBP19.68■□□□□ 0.74
VPS53-211ENST00000571805 GLYATL2Q8WU03 294 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 MOB3AQ96BX8 217 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 MSI2Q96DH6 328 aaKnown RBP19.68■□□□□ 0.74
VPS53-211ENST00000571805 TECTBQ96PL2 329 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 SMIM3Q9BZL3 60 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 NDRG3Q9UGV2 375 aa19.68■□□□□ 0.74
VPS53-211ENST00000571805 C19orf67A6NJJ6 358 aa19.67■□□□□ 0.74
VPS53-211ENST00000571805 LAMTOR5O43504 91 aa19.67■□□□□ 0.74
VPS53-211ENST00000571805 SNAPINO95295 136 aa19.67■□□□□ 0.74
VPS53-211ENST00000571805 UCP3P55916 312 aa19.67■□□□□ 0.74
VPS53-211ENST00000571805 COLCA1Q6ZS62 124 aa19.67■□□□□ 0.74
VPS53-211ENST00000571805 UBAC2Q8NBM4 344 aa19.67■□□□□ 0.74
VPS53-211ENST00000571805 TMEM45BQ96B21 275 aa19.67■□□□□ 0.74
VPS53-211ENST00000571805 BSCL2Q96G97 398 aaPredicted RBP19.67■□□□□ 0.74
VPS53-211ENST00000571805 PRDM14Q9GZV8 571 aa19.67■□□□□ 0.74
VPS53-211ENST00000571805 E5RGE8 158 aa19.66■□□□□ 0.74
VPS53-211ENST00000571805 RNASEK-C17orf49H0YIS7 233 aa19.66■□□□□ 0.74
VPS53-211ENST00000571805 IGHV3-9P01782 118 aa19.66■□□□□ 0.74
VPS53-211ENST00000571805 CD5P06127 495 aa19.66■□□□□ 0.74
VPS53-211ENST00000571805 FLI1Q01543 452 aaPredicted RBP19.66■□□□□ 0.74
VPS53-211ENST00000571805 TMEM211Q6ICI0 200 aa19.66■□□□□ 0.74
VPS53-211ENST00000571805 SLC23A3Q6PIS1 610 aa19.66■□□□□ 0.74
VPS53-211ENST00000571805 C6orf15Q6UXA7 325 aaPredicted RBP19.66■□□□□ 0.74
VPS53-211ENST00000571805 SPAG16Q8N0X2 631 aa19.66■□□□□ 0.74
VPS53-211ENST00000571805 ARV1Q9H2C2 271 aa19.66■□□□□ 0.74
VPS53-211ENST00000571805 NSG2Q9Y328 171 aa19.66■□□□□ 0.74
VPS53-211ENST00000571805 FUT3P21217 361 aa19.66■□□□□ 0.74
VPS53-211ENST00000571805 PMELP40967 661 aa19.66■□□□□ 0.74
VPS53-211ENST00000571805 NPBWR2P48146 333 aa19.66■□□□□ 0.74
VPS53-211ENST00000571805 OR11L1Q8NGX0 322 aa19.66■□□□□ 0.74
VPS53-211ENST00000571805 P4HTMQ9NXG6 502 aa19.66■□□□□ 0.74
VPS53-211ENST00000571805 STARD10Q9Y365 291 aa19.66■□□□□ 0.74
VPS53-211ENST00000571805 IL32P24001 234 aa19.65■□□□□ 0.74
VPS53-211ENST00000571805 NRN1LQ496H8 165 aa19.65■□□□□ 0.74
VPS53-211ENST00000571805 CLEC9AQ6UXN8 241 aa19.65■□□□□ 0.74
VPS53-211ENST00000571805 ZNF611Q8N823 705 aa19.65■□□□□ 0.74
VPS53-211ENST00000571805 OR5L1Q8NGL2 311 aa19.65■□□□□ 0.74
VPS53-211ENST00000571805 LYPD6BQ8NI32 183 aa19.65■□□□□ 0.74
VPS53-211ENST00000571805 RSRP1Q9BUV0 290 aa19.65■□□□□ 0.74
VPS53-211ENST00000571805 NDUFA2O43678 99 aa19.65■□□□□ 0.74
VPS53-211ENST00000571805 FARS2O95363 451 aaKnown RBP19.65■□□□□ 0.74
VPS53-211ENST00000571805 GLI4P10075 376 aa19.65■□□□□ 0.74
VPS53-211ENST00000571805 ACP1P24666 158 aa19.65■□□□□ 0.74
VPS53-211ENST00000571805 ID4P47928 161 aa19.65■□□□□ 0.74
VPS53-211ENST00000571805 Q8NFD4 153 aa19.65■□□□□ 0.74
VPS53-211ENST00000571805 LOXL2Q9Y4K0 774 aa19.65■□□□□ 0.74
VPS53-211ENST00000571805 SPINK14Q6IE38 97 aa19.64■□□□□ 0.74
VPS53-211ENST00000571805 SLC25A26Q70HW3 274 aa19.64■□□□□ 0.74
VPS53-211ENST00000571805 SYT3Q9BQG1 590 aa19.64■□□□□ 0.74
VPS53-211ENST00000571805 IGKV3D-15A0A087WSY6 115 aa19.64■□□□□ 0.73
VPS53-211ENST00000571805 DIRAS3O95661 229 aa19.64■□□□□ 0.73
VPS53-211ENST00000571805 AADACP22760 399 aa19.64■□□□□ 0.73
VPS53-211ENST00000571805 F2RL1P55085 397 aa19.64■□□□□ 0.73
VPS53-211ENST00000571805 Q6ZRG5 221 aa19.64■□□□□ 0.73
VPS53-211ENST00000571805 OR52M1Q8NGK5 317 aa19.64■□□□□ 0.73
VPS53-211ENST00000571805 SMOC1Q9H4F8 434 aa19.64■□□□□ 0.73
VPS53-211ENST00000571805 PARPBPQ9NWS1 579 aa19.64■□□□□ 0.73
VPS53-211ENST00000571805 ZDHHC8Q9ULC8 765 aa19.64■□□□□ 0.73
VPS53-211ENST00000571805 NOSIPQ9Y314 301 aaKnown RBP19.64■□□□□ 0.73
VPS53-211ENST00000571805 FAM157AC9JC47 383 aa19.63■□□□□ 0.73
VPS53-211ENST00000571805 C9JQL5 133 aa19.63■□□□□ 0.73
VPS53-211ENST00000571805 H7C2Y5 167 aa19.63■□□□□ 0.73
VPS53-211ENST00000571805 LGI3Q8N145 548 aa19.63■□□□□ 0.73
VPS53-211ENST00000571805 BATF2Q8N1L9 274 aa19.63■□□□□ 0.73
VPS53-211ENST00000571805 POM121Q96HA1 1249 aa19.63■□□□□ 0.73
VPS53-211ENST00000571805 ZNF442Q9H7R0 627 aa19.63■□□□□ 0.73
VPS53-211ENST00000571805 WFDC1Q9HC57 220 aa19.63■□□□□ 0.73
VPS53-211ENST00000571805 SLC7A10Q9NS82 523 aa19.63■□□□□ 0.73
VPS53-211ENST00000571805 MRPL33O75394 65 aaKnown RBP19.63■□□□□ 0.73
VPS53-211ENST00000571805 OR7C1O76099 320 aaPredicted RBP19.63■□□□□ 0.73
VPS53-211ENST00000571805 SFTA3P0C7M3 94 aa19.63■□□□□ 0.73
VPS53-211ENST00000571805 PLSCR2Q9NRY7 297 aa19.63■□□□□ 0.73
VPS53-211ENST00000571805 LRFN1Q9P244 771 aa19.63■□□□□ 0.73
VPS53-211ENST00000571805 ATPIF1Q9UII2 106 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms