RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ABCG5Q9H222 651 aa13.97□□□□□ -0.17
CLK3-227ENST00000570296 DNAJB9Q9UBS3 223 aa13.97□□□□□ -0.17
CLK3-227ENST00000570296 FAM172BPA6NC97 362 aa13.96□□□□□ -0.17
CLK3-227ENST00000570296 HSPA12AO43301 675 aa13.96□□□□□ -0.17
CLK3-227ENST00000570296 GYPBP06028 91 aa13.96□□□□□ -0.17
CLK3-227ENST00000570296 SPI1P17947 270 aa13.96□□□□□ -0.17
CLK3-227ENST00000570296 PSMA6P60900 246 aaKnown RBP13.96□□□□□ -0.17
CLK3-227ENST00000570296 ISL1P61371 349 aa13.96□□□□□ -0.17
CLK3-227ENST00000570296 RIPPLY1Q0D2K3 151 aa13.96□□□□□ -0.17
CLK3-227ENST00000570296 RBM39Q14498 530 aaKnown RBP13.96□□□□□ -0.17
CLK3-227ENST00000570296 HNF4GQ14541 408 aa13.96□□□□□ -0.17
CLK3-227ENST00000570296 COQ5Q5HYK3 327 aa13.96□□□□□ -0.17
CLK3-227ENST00000570296 TGIF2LXQ8IUE1 241 aa13.96□□□□□ -0.17
CLK3-227ENST00000570296 OR6K6Q8NGW6 343 aa13.96□□□□□ -0.17
CLK3-227ENST00000570296 OR6N2Q8NGY6 317 aa13.96□□□□□ -0.17
CLK3-227ENST00000570296 OR52J3Q8NH60 311 aa13.96□□□□□ -0.17
CLK3-227ENST00000570296 NMNAT2Q9BZQ4 307 aa13.96□□□□□ -0.17
CLK3-227ENST00000570296 CCDC134Q9H6E4 229 aa13.96□□□□□ -0.17
CLK3-227ENST00000570296 LIN7CQ9NUP9 197 aaKnown RBP13.96□□□□□ -0.17
CLK3-227ENST00000570296 NDUFAF4Q9P032 175 aa13.96□□□□□ -0.17
CLK3-227ENST00000570296 VSIG4Q9Y279 399 aa13.96□□□□□ -0.17
CLK3-227ENST00000570296 A0A087X0M5 115 aa13.95□□□□□ -0.18
CLK3-227ENST00000570296 A0A0U1RQV5 110 aa13.95□□□□□ -0.18
CLK3-227ENST00000570296 A0A1B0GX30 115 aa13.95□□□□□ -0.18
CLK3-227ENST00000570296 A0A1W2PPI3 338 aa13.95□□□□□ -0.18
CLK3-227ENST00000570296 PQLC2LA1A4F0 135 aa13.95□□□□□ -0.18
CLK3-227ENST00000570296 MAGEA13PA6NCF6 341 aa13.95□□□□□ -0.18
CLK3-227ENST00000570296 PSPNO60542 156 aa13.95□□□□□ -0.18
CLK3-227ENST00000570296 NRASP01111 189 aa13.95□□□□□ -0.18
CLK3-227ENST00000570296 OR8U9P0C7N5 309 aa13.95□□□□□ -0.18
CLK3-227ENST00000570296 VDAC1P21796 283 aa13.95□□□□□ -0.18
CLK3-227ENST00000570296 ERP29P30040 261 aaKnown RBP13.95□□□□□ -0.18
CLK3-227ENST00000570296 P2RX3P56373 397 aa13.95□□□□□ -0.18
CLK3-227ENST00000570296 RNLSQ5VYX0 342 aa13.95□□□□□ -0.18
CLK3-227ENST00000570296 SHFQ7M4L6 423 aa13.95□□□□□ -0.18
CLK3-227ENST00000570296 OR52L1Q8NGH7 329 aa13.95□□□□□ -0.18
CLK3-227ENST00000570296 DYDC1Q8WWB3 177 aa13.95□□□□□ -0.18
CLK3-227ENST00000570296 INTS14Q96SY0 518 aa13.95□□□□□ -0.18
CLK3-227ENST00000570296 GNB4Q9HAV0 340 aa13.95□□□□□ -0.18
CLK3-227ENST00000570296 SEBOXQ9HB31 216 aaPredicted RBP13.95□□□□□ -0.18
CLK3-227ENST00000570296 ENPP5Q9UJA9 477 aa13.95□□□□□ -0.18
CLK3-227ENST00000570296 AMMECR1Q9Y4X0 333 aaPredicted RBP13.95□□□□□ -0.18
CLK3-227ENST00000570296 PKHD1P08F94 4074 aa13.94□□□□□ -0.18
CLK3-227ENST00000570296 TRGV10A0A0A0MS01 117 aa13.94□□□□□ -0.18
CLK3-227ENST00000570296 MGST3O14880 152 aa13.94□□□□□ -0.18
CLK3-227ENST00000570296 IGKV1D-33P01593 117 aa13.94□□□□□ -0.18
CLK3-227ENST00000570296 IGKV1-33P01594 117 aa13.94□□□□□ -0.18
CLK3-227ENST00000570296 GSSP48637 474 aa13.94□□□□□ -0.18
CLK3-227ENST00000570296 GNB1P62873 340 aa13.94□□□□□ -0.18
CLK3-227ENST00000570296 IL24Q13007 206 aa13.94□□□□□ -0.18
CLK3-227ENST00000570296 SLX4IPQ5VYV7 408 aa13.94□□□□□ -0.18
CLK3-227ENST00000570296 ERI1Q8IV48 349 aaKnown RBP13.94□□□□□ -0.18
CLK3-227ENST00000570296 OR52N4Q8NGI2 321 aa13.94□□□□□ -0.18
CLK3-227ENST00000570296 DLX4Q92988 240 aaPredicted RBP13.94□□□□□ -0.18
CLK3-227ENST00000570296 PKIBQ9C010 78 aa13.94□□□□□ -0.18
CLK3-227ENST00000570296 CHST6Q9GZX3 395 aa13.94□□□□□ -0.18
CLK3-227ENST00000570296 TAS2R3Q9NYW6 316 aa13.94□□□□□ -0.18
CLK3-227ENST00000570296 GLS2Q9UI32 602 aa13.94□□□□□ -0.18
CLK3-227ENST00000570296 ZNF580Q9UK33 172 aa13.94□□□□□ -0.18
CLK3-227ENST00000570296 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.94□□□□□ -0.18
CLK3-227ENST00000570296 CXCR6O00574 342 aa13.93□□□□□ -0.18
CLK3-227ENST00000570296 GSC2O15499 205 aa13.93□□□□□ -0.18
CLK3-227ENST00000570296 ARSBP15848 533 aa13.93□□□□□ -0.18
CLK3-227ENST00000570296 GABRR1P24046 479 aa13.93□□□□□ -0.18
CLK3-227ENST00000570296 GDNFP39905 211 aa13.93□□□□□ -0.18
CLK3-227ENST00000570296 CRMP1Q14194 572 aa13.93□□□□□ -0.18
CLK3-227ENST00000570296 LINC01590Q5TEZ4 76 aa13.93□□□□□ -0.18
CLK3-227ENST00000570296 RPL13AP3Q6NVV1 102 aa13.93□□□□□ -0.18
CLK3-227ENST00000570296 TRPM8Q7Z2W7 1104 aa13.93□□□□□ -0.18
CLK3-227ENST00000570296 PGAM4Q8N0Y7 254 aa13.93□□□□□ -0.18
CLK3-227ENST00000570296 OR8H3Q8N146 312 aa13.93□□□□□ -0.18
CLK3-227ENST00000570296 ZNF491Q8N8L2 437 aa13.93□□□□□ -0.18
CLK3-227ENST00000570296 CORO2AQ92828 525 aa13.93□□□□□ -0.18
CLK3-227ENST00000570296 ST6GALNAC5Q9BVH7 336 aa13.93□□□□□ -0.18
CLK3-227ENST00000570296 OR51J1Q9H342 316 aa13.93□□□□□ -0.18
CLK3-227ENST00000570296 RETNQ9HD89 108 aa13.93□□□□□ -0.18
CLK3-227ENST00000570296 INTS9Q9NV88 658 aaKnown RBP13.93□□□□□ -0.18
CLK3-227ENST00000570296 KIAA1456Q9P272 454 aa13.93□□□□□ -0.18
CLK3-227ENST00000570296 SLC7A11Q9UPY5 501 aa13.93□□□□□ -0.18
CLK3-227ENST00000570296 PIGLQ9Y2B2 252 aa13.93□□□□□ -0.18
CLK3-227ENST00000570296 CDH10Q9Y6N8 788 aa13.93□□□□□ -0.18
CLK3-227ENST00000570296 MRASO14807 208 aa13.92□□□□□ -0.18
CLK3-227ENST00000570296 IGHA1P01876 353 aa13.92□□□□□ -0.18
CLK3-227ENST00000570296 OR5H8P0DN80 308 aa13.92□□□□□ -0.18
CLK3-227ENST00000570296 CLUP10909 449 aa13.92□□□□□ -0.18
CLK3-227ENST00000570296 IFNGR2P38484 337 aa13.92□□□□□ -0.18
CLK3-227ENST00000570296 KIAA0141Q14154 515 aaPredicted RBP13.92□□□□□ -0.18
CLK3-227ENST00000570296 KPNB1Q14974 876 aaKnown RBP13.92□□□□□ -0.18
CLK3-227ENST00000570296 RNF148Q8N7C7 305 aa13.92□□□□□ -0.18
CLK3-227ENST00000570296 OR9G1Q8NH87 305 aa13.92□□□□□ -0.18
CLK3-227ENST00000570296 ARPC1AQ92747 370 aa13.92□□□□□ -0.18
CLK3-227ENST00000570296 OR4C12Q96R67 309 aa13.92□□□□□ -0.18
CLK3-227ENST00000570296 HIPK2Q9H2X6 1198 aa13.92□□□□□ -0.18
CLK3-227ENST00000570296 AP3M1Q9Y2T2 418 aa13.92□□□□□ -0.18
CLK3-227ENST00000570296 NCBP2LA6PVI3 153 aaKnown RBP13.91□□□□□ -0.18
CLK3-227ENST00000570296 BBIP1A8MTZ0 92 aa13.91□□□□□ -0.18
CLK3-227ENST00000570296 HAND1O96004 215 aa13.91□□□□□ -0.18
CLK3-227ENST00000570296 RAB7AP51149 207 aa13.91□□□□□ -0.18
CLK3-227ENST00000570296 SMIM11AP58511 58 aa13.91□□□□□ -0.18
CLK3-227ENST00000570296 TSPAN31Q12999 210 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms