RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 GLIPR1L1Q6UWM5 242 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 DCDC5Q6ZRR9 648 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 GPR141Q7Z602 305 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 TPRA1Q86W33 373 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 MKXQ8IYA7 352 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 C1orf87Q8N0U7 546 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 FAM58AQ8N1B3 248 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 JAGN1Q8N5M9 183 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 RAB1CQ92928 201 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 CCL13Q99616 98 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 SHARPINQ9H0F6 387 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 RASL12Q9NYN1 266 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 FBLN5Q9UBX5 448 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 V9GY05 133 aa7.72□□□□□ -1.17
VPS35-211ENST00000569950 SETD2Q9BYW2 2564 aaPredicted RBP7.72□□□□□ -1.17
VPS35-211ENST00000569950 TRAV24A0A0B4J272 114 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 RFPL4AA6NLU0 287 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 NOTOA8MTQ0 251 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 RFPL4AL1F8VTS6 287 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 H3BMQ9 156 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 TRAPPC2LH3BP13 241 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 AIPO00170 330 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 SIGLEC5O15389 551 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 PSPNO60542 156 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 NXPH2O95156 264 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 KNG1P01042 644 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 IGHV4-31P0DP07 118 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 LMO1P25800 156 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 HTR2CP28335 458 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 EFNB2P52799 333 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 RBM11P57052 281 aaKnown RBP7.71□□□□□ -1.18
VPS35-211ENST00000569950 MXD1Q05195 221 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 TMEM249Q2WGJ8 235 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 TIMM50Q3ZCQ8 353 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 SLC22A6Q4U2R8 563 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 HES5Q5TA89 166 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 GLT8D1Q68CQ7 371 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 SFXN4Q6P4A7 337 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 Q6ZPA2 131 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 C17orf107Q6ZR85 190 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 TCF23Q7RTU1 214 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 CLVS1Q8IUQ0 354 aaPredicted RBP7.71□□□□□ -1.18
VPS35-211ENST00000569950 OR51D1Q8NGF3 324 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 OR6M1Q8NGM8 313 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 EMG1Q92979 244 aaKnown RBP7.71□□□□□ -1.18
VPS35-211ENST00000569950 ISOC1Q96CN7 298 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 Q96M66 194 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 GPER1Q99527 375 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 DNTTIP1Q9H147 329 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 ZNF665Q9H7R5 613 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 IFT22Q9H7X7 185 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 RHOFQ9HBH0 211 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 RCC2Q9P258 522 aaKnown RBP7.71□□□□□ -1.18
VPS35-211ENST00000569950 OR5V1Q9UGF6 321 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 POLR3KQ9Y2Y1 108 aaPredicted RBP7.71□□□□□ -1.18
VPS35-211ENST00000569950 ZFHX3Q15911 3703 aa7.71□□□□□ -1.18
VPS35-211ENST00000569950 TRAV38-1A0A0B4J264 116 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 TMEM272A0A1B0GTI8 110 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 DPPA5A6NC42 116 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 C22orf46C9J442 243 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 GEMIN2O14893 280 aaKnown RBP7.7□□□□□ -1.18
VPS35-211ENST00000569950 MAGEB3O15480 346 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 BPNT1O95861 308 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 PAHP00439 452 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 IL1AP01583 271 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 IRF2P14316 349 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 MGMTP16455 207 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 PRKACAP17612 351 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 MYL9P24844 172 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 PRDX2P32119 198 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 OR3A1P47881 315 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 TMBIM6P55061 237 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 RPS27AP62979 156 aaKnown RBP7.7□□□□□ -1.18
VPS35-211ENST00000569950 PDCD1Q15116 288 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 MICBQ29980 383 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 SMIM21Q3B7S5 101 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 C2orf76Q3KRA6 126 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 SPIN3Q5JUX0 258 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 WDR25Q64LD2 544 aaPredicted RBP7.7□□□□□ -1.18
VPS35-211ENST00000569950 AWAT2Q6E213 333 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 Q8IYB0 196 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 MUC20Q8N307 709 aaPredicted RBP7.7□□□□□ -1.18
VPS35-211ENST00000569950 FAM89BQ8N5H3 189 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 ZNRF1Q8ND25 227 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 OR5H6Q8NGV6 325 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 SLC25A46Q96AG3 418 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 FAM3DQ96BQ1 224 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 FOXRED1Q96CU9 486 aaPredicted RBP7.7□□□□□ -1.18
VPS35-211ENST00000569950 MSI2Q96DH6 328 aaKnown RBP7.7□□□□□ -1.18
VPS35-211ENST00000569950 SLC25A38Q96DW6 304 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 TIMD4Q96H15 378 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 SMR3AQ99954 134 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 GAL3ST1Q99999 423 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 NICN1Q9BSH3 213 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 TM2D1Q9BX74 207 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 FAM192AQ9GZU8 254 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 SLITRK2Q9H156 845 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 LPAR5Q9H1C0 372 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 BANF2Q9H503 90 aa7.7□□□□□ -1.18
VPS35-211ENST00000569950 ELL3Q9HB65 397 aaPredicted RBP7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms