RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 ZSCAN4Q8NAM6 433 aaPredicted RBP8.07□□□□□ -1.12
CLK3-220ENST00000567992 DMRTB1Q96MA1 342 aa8.07□□□□□ -1.12
CLK3-220ENST00000567992 WDFY2Q96P53 400 aa8.07□□□□□ -1.12
CLK3-220ENST00000567992 SLC6A7Q99884 636 aa8.07□□□□□ -1.12
CLK3-220ENST00000567992 SEBOXQ9HB31 216 aaPredicted RBP8.07□□□□□ -1.12
CLK3-220ENST00000567992 HMG20AQ9NP66 347 aa8.07□□□□□ -1.12
CLK3-220ENST00000567992 C19orf12Q9NSK7 152 aa8.07□□□□□ -1.12
CLK3-220ENST00000567992 ZNF69Q9UC07 566 aa8.07□□□□□ -1.12
CLK3-220ENST00000567992 NUP50Q9UKX7 468 aa8.07□□□□□ -1.12
CLK3-220ENST00000567992 SOX21Q9Y651 276 aaPredicted RBP8.07□□□□□ -1.12
CLK3-220ENST00000567992 TENM1Q9UKZ4 2725 aa8.07□□□□□ -1.12
CLK3-220ENST00000567992 IGHV3OR16-10A0A075B7F0 116 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 TRBV23-1A0A0A0MS06 115 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 A0A1W2PPK0 400 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 K7N7A8 449 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 TOX4O94842 621 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 HAND1O96004 215 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 CYB5AP00167 134 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 IFNA2P01563 188 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 TK1P04183 234 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 OCMP0CE72 109 aaPredicted RBP8.06□□□□□ -1.12
CLK3-220ENST00000567992 PRKACAP17612 351 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 DUSP1P28562 367 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 BDKRB2P30411 391 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 OR3A4PP47883 348 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 ARF6P62330 175 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 PPP3R1P63098 170 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 TPBGQ13641 420 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 TBCEQ15813 527 aaPredicted RBP8.06□□□□□ -1.12
CLK3-220ENST00000567992 SPIN3Q5JUX0 258 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 DDI2Q5TDH0 399 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 LIPKQ5VXJ0 399 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 ELP2Q6IA86 826 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 UNQ9370/PRO34162Q6UXP9 181 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 ASCL4Q6XD76 172 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 C17orf107Q6ZR85 190 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 C9orf139Q6ZV77 190 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 TCF23Q7RTU1 214 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 BCL6BQ8N143 479 aaPredicted RBP8.06□□□□□ -1.12
CLK3-220ENST00000567992 KIR3DL3Q8N743 410 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 Q8NFD4 153 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 PXT1Q8NFP0 134 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 TNFAIP8L1Q8WVP5 186 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 C22orf15Q8WYQ4 148 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 H1FXQ92522 213 aaKnown RBP8.06□□□□□ -1.12
CLK3-220ENST00000567992 ZNF48Q96MX3 618 aaPredicted RBP8.06□□□□□ -1.12
CLK3-220ENST00000567992 MDFIQ99750 246 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 PCGF1Q9BSM1 259 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 FAM234AQ9H0X4 552 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 PPIL3Q9H2H8 161 aaKnown RBP8.06□□□□□ -1.12
CLK3-220ENST00000567992 OCEL1Q9H607 264 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 CNTD2Q9H8S5 307 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 NEK6Q9HC98 313 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 NOX4Q9NPH5 578 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 TMEM138Q9NPI0 162 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 BLOC1S6Q9UL45 172 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 KPTNQ9Y664 436 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 STAB1Q9NY15 2570 aa8.06□□□□□ -1.12
CLK3-220ENST00000567992 CENPVL3A0A0U1RRI6 287 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 PSPNO60542 156 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 RGS9O75916 674 aaPredicted RBP8.05□□□□□ -1.12
CLK3-220ENST00000567992 CHRM2P08172 466 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 TMEM225BP0DP42 221 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 ZNF93P35789 620 aaPredicted RBP8.05□□□□□ -1.12
CLK3-220ENST00000567992 TGFBR2P37173 567 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 OR3A1P47881 315 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 CAPZA1P52907 286 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 SNU13P55769 128 aaKnown RBP8.05□□□□□ -1.12
CLK3-220ENST00000567992 DLX1P56177 255 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 RPS25P62851 125 aaKnown RBP8.05□□□□□ -1.12
CLK3-220ENST00000567992 MLLT11Q13015 90 aaPredicted RBP8.05□□□□□ -1.12
CLK3-220ENST00000567992 GPR50Q13585 617 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 ZNF273Q14593 569 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 FAM27D1Q5T7N8 215 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 METTL11BQ5VVY1 283 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 RUSC1-AS1Q66K80 236 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 Q6P435 159 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 USP43Q70EL4 1123 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 VMO1Q7Z5L0 202 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 SATL1Q86VE3 508 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 OR8H2Q8N162 312 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 C11orf42Q8N5U0 333 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 MS4A15Q8N5U1 240 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 ASCC1Q8N9N2 400 aaKnown RBP8.05□□□□□ -1.12
CLK3-220ENST00000567992 UFD1Q92890 307 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 TNFRSF14Q92956 283 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 CPNE2Q96FN4 548 aaPredicted RBP8.05□□□□□ -1.12
CLK3-220ENST00000567992 C1orf147Q96MC9 270 aaPredicted RBP8.05□□□□□ -1.12
CLK3-220ENST00000567992 TMED9Q9BVK6 235 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 CCDC90BQ9GZT6 254 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 RHOFQ9HBH0 211 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 ISYNA1Q9NPH2 558 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 ACOT13Q9NPJ3 140 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 ESM1Q9NQ30 184 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 IL36GQ9NZH8 169 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 ONECUT1Q9UBC0 465 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 FOXJ3Q9UPW0 622 aa8.05□□□□□ -1.12
CLK3-220ENST00000567992 SF3B6Q9Y3B4 125 aaKnown RBP8.05□□□□□ -1.12
CLK3-220ENST00000567992 M0R1W7 72 aa8.04□□□□□ -1.12
CLK3-220ENST00000567992 SIRPB1O00241 398 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms