RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 MYRFQ9Y2G1 1151 aa13.72□□□□□ -0.21
CLK3-210ENST00000563112 PCDHGB5Q9Y5G0 923 aa13.72□□□□□ -0.21
CLK3-210ENST00000563112 hADV38S2A0JD32 116 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 CLPXO76031 633 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 IGHA1P01876 353 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 RBP4P02753 201 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 MT-ND2P03891 347 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 CCDC159P0C7I6 412 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 PRKACAP17612 351 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 BCL3P20749 454 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 GABRR1P24046 479 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 NPBWR2P48146 333 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 GBX2P52951 348 aaPredicted RBP13.71□□□□□ -0.21
CLK3-210ENST00000563112 SRSF4Q08170 494 aaKnown RBP13.71□□□□□ -0.21
CLK3-210ENST00000563112 PDZK1IP1Q13113 114 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 EDDM3AQ14507 147 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 GRK1Q15835 563 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 SPIN3Q5JUX0 258 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 TREML4Q6UXN2 200 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 ZNF782Q6ZMW2 699 aaPredicted RBP13.71□□□□□ -0.21
CLK3-210ENST00000563112 OR13C9Q8NGT0 318 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 OR13D1Q8NGV5 346 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 HAVCR2Q8TDQ0 301 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 RDH12Q96NR8 316 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 COMMD4Q9H0A8 199 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 PPA2Q9H2U2 334 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 ZCCHC4Q9H5U6 513 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 RBFOX1Q9NWB1 397 aaKnown RBP13.71□□□□□ -0.21
CLK3-210ENST00000563112 ERVK13-1Q9NX77 482 aa13.71□□□□□ -0.21
CLK3-210ENST00000563112 TRRAPQ9Y4A5 3859 aa13.71□□□□□ -0.22
CLK3-210ENST00000563112 TMEM82A0PJX8 343 aa13.7□□□□□ -0.22
CLK3-210ENST00000563112 TMEM212A6NML5 194 aa13.7□□□□□ -0.22
CLK3-210ENST00000563112 TIMM23O14925 209 aa13.7□□□□□ -0.22
CLK3-210ENST00000563112 TSPAN9O75954 239 aa13.7□□□□□ -0.22
CLK3-210ENST00000563112 BMXP51813 675 aa13.7□□□□□ -0.22
CLK3-210ENST00000563112 SNU13P55769 128 aaKnown RBP13.7□□□□□ -0.22
CLK3-210ENST00000563112 DLX6P56179 175 aa13.7□□□□□ -0.22
CLK3-210ENST00000563112 ZNF146Q15072 292 aa13.7□□□□□ -0.22
CLK3-210ENST00000563112 ZSCAN26Q16670 478 aa13.7□□□□□ -0.22
CLK3-210ENST00000563112 OR51A4Q8NGJ6 313 aa13.7□□□□□ -0.22
CLK3-210ENST00000563112 OR5D14Q8NGL3 314 aa13.7□□□□□ -0.22
CLK3-210ENST00000563112 OR10AC1Q8NH08 325 aa13.7□□□□□ -0.22
CLK3-210ENST00000563112 OR5AK2Q8NH90 309 aa13.7□□□□□ -0.22
CLK3-210ENST00000563112 C17orf50Q8WW18 174 aa13.7□□□□□ -0.22
CLK3-210ENST00000563112 RFT1Q96AA3 541 aa13.7□□□□□ -0.22
CLK3-210ENST00000563112 ZNF714Q96N38 554 aa13.7□□□□□ -0.22
CLK3-210ENST00000563112 CITED1Q99966 193 aa13.7□□□□□ -0.22
CLK3-210ENST00000563112 ISG20L2Q9H9L3 353 aaKnown RBP13.7□□□□□ -0.22
CLK3-210ENST00000563112 RAB18Q9NP72 206 aa13.7□□□□□ -0.22
CLK3-210ENST00000563112 MRPS18AQ9NVS2 196 aaKnown RBP13.7□□□□□ -0.22
CLK3-210ENST00000563112 SMPD3Q9NY59 655 aaPredicted RBP13.7□□□□□ -0.22
CLK3-210ENST00000563112 MEGF8Q7Z7M0 2845 aa13.7□□□□□ -0.22
CLK3-210ENST00000563112 M0QZ24 198 aa13.69□□□□□ -0.22
CLK3-210ENST00000563112 SH2D1BO14796 132 aa13.69□□□□□ -0.22
CLK3-210ENST00000563112 MGST3O14880 152 aa13.69□□□□□ -0.22
CLK3-210ENST00000563112 ARG1P05089 322 aa13.69□□□□□ -0.22
CLK3-210ENST00000563112 DUSP1P28562 367 aa13.69□□□□□ -0.22
CLK3-210ENST00000563112 PROK1P58294 105 aa13.69□□□□□ -0.22
CLK3-210ENST00000563112 LY6EQ16553 131 aa13.69□□□□□ -0.22
CLK3-210ENST00000563112 LPCAT4Q643R3 524 aa13.69□□□□□ -0.22
CLK3-210ENST00000563112 SERPINA12Q8IW75 414 aa13.69□□□□□ -0.22
CLK3-210ENST00000563112 OR52I1Q8NGK6 324 aa13.69□□□□□ -0.22
CLK3-210ENST00000563112 TSEN15Q8WW01 171 aaKnown RBP13.69□□□□□ -0.22
CLK3-210ENST00000563112 AJUBAQ96IF1 538 aa13.69□□□□□ -0.22
CLK3-210ENST00000563112 CHST6Q9GZX3 395 aa13.69□□□□□ -0.22
CLK3-210ENST00000563112 RHOFQ9HBH0 211 aa13.69□□□□□ -0.22
CLK3-210ENST00000563112 TCF7L1Q9HCS4 588 aa13.69□□□□□ -0.22
CLK3-210ENST00000563112 HMG20AQ9NP66 347 aa13.69□□□□□ -0.22
CLK3-210ENST00000563112 EXOSC4Q9NPD3 245 aaKnown RBP13.69□□□□□ -0.22
CLK3-210ENST00000563112 IL36RNQ9UBH0 155 aa13.69□□□□□ -0.22
CLK3-210ENST00000563112 DHDHQ9UQ10 334 aa13.69□□□□□ -0.22
CLK3-210ENST00000563112 GSTK1Q9Y2Q3 226 aa13.69□□□□□ -0.22
CLK3-210ENST00000563112 TBL2Q9Y4P3 447 aaKnown RBP13.69□□□□□ -0.22
CLK3-210ENST00000563112 LINC00312Q9Y6C7 94 aa13.69□□□□□ -0.22
CLK3-210ENST00000563112 MEX3AA1L020 520 aaKnown RBP13.68□□□□□ -0.22
CLK3-210ENST00000563112 FUOMA2VDF0 154 aa13.68□□□□□ -0.22
CLK3-210ENST00000563112 ZFPL1O95159 310 aa13.68□□□□□ -0.22
CLK3-210ENST00000563112 HCKP08631 526 aa13.68□□□□□ -0.22
CLK3-210ENST00000563112 IGHV1-8P0DP01 117 aa13.68□□□□□ -0.22
CLK3-210ENST00000563112 CALCBP10092 127 aa13.68□□□□□ -0.22
CLK3-210ENST00000563112 SLC35E4Q6ICL7 350 aa13.68□□□□□ -0.22
CLK3-210ENST00000563112 SAXO1Q8IYX7 474 aa13.68□□□□□ -0.22
CLK3-210ENST00000563112 DTX3Q8N9I9 347 aa13.68□□□□□ -0.22
CLK3-210ENST00000563112 OR52N4Q8NGI2 321 aa13.68□□□□□ -0.22
CLK3-210ENST00000563112 OR5D18Q8NGL1 313 aa13.68□□□□□ -0.22
CLK3-210ENST00000563112 FOXRED1Q96CU9 486 aaPredicted RBP13.68□□□□□ -0.22
CLK3-210ENST00000563112 SPACA5Q96QH8 159 aa13.68□□□□□ -0.22
CLK3-210ENST00000563112 DSCAML1Q8TD84 2053 aa13.68□□□□□ -0.22
CLK3-210ENST00000563112 IRGMA1A4Y4 181 aa13.67□□□□□ -0.22
CLK3-210ENST00000563112 SIRPB1O00241 398 aa13.67□□□□□ -0.22
CLK3-210ENST00000563112 SULT1B1O43704 296 aa13.67□□□□□ -0.22
CLK3-210ENST00000563112 KDM4BO94953 1096 aa13.67□□□□□ -0.22
CLK3-210ENST00000563112 ALX3O95076 343 aa13.67□□□□□ -0.22
CLK3-210ENST00000563112 TMEM225BP0DP42 221 aa13.67□□□□□ -0.22
CLK3-210ENST00000563112 ERP29P30040 261 aaKnown RBP13.67□□□□□ -0.22
CLK3-210ENST00000563112 GABRA5P31644 462 aa13.67□□□□□ -0.22
CLK3-210ENST00000563112 DYNC1I2Q13409 638 aaKnown RBP13.67□□□□□ -0.22
CLK3-210ENST00000563112 LIAT1Q6ZQX7 453 aa13.67□□□□□ -0.22
CLK3-210ENST00000563112 TRAPPC6BQ86SZ2 158 aa13.67□□□□□ -0.22
CLK3-210ENST00000563112 TPRX1Q8N7U7 411 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms