RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 CITED4Q96RK1 184 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 CCL19Q99731 98 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 SMIM3Q9BZL3 60 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 ISYNA1Q9NPH2 558 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 CYSLTR2Q9NS75 346 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 RYDENQ9NUL5 291 aaKnown RBP7.99□□□□□ -1.13
VPS39-205ENST00000562258 PSG11Q9UQ72 335 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 HECTD1Q9ULT8 2610 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 A8MXE2 369 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 ZNF701M0R085 212 aaPredicted RBP7.99□□□□□ -1.13
VPS39-205ENST00000562258 PSMB1P20618 241 aaKnown RBP7.99□□□□□ -1.13
VPS39-205ENST00000562258 DCTDP32321 178 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 KIR3DL2P43630 455 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 RPS4XP62701 263 aaKnown RBP7.99□□□□□ -1.13
VPS39-205ENST00000562258 RPEQ96AT9 228 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 RNF122Q9H9V4 155 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 HEYLQ9NQ87 328 aaPredicted RBP7.99□□□□□ -1.13
VPS39-205ENST00000562258 FOXD3Q9UJU5 478 aaPredicted RBP7.99□□□□□ -1.13
VPS39-205ENST00000562258 VCANP13611 3396 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 KANTRA0A1W2PQU2 76 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 J3QT63 122 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 SYNGR1O43759 233 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 UPK1BO75841 260 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 CRYBA1P05813 215 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 DNASE1P24855 282 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 CRYBB2P43320 205 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 RPL31P62899 125 aaKnown RBP7.99□□□□□ -1.13
VPS39-205ENST00000562258 GABRA6Q16445 453 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 PRSS35Q8N3Z0 413 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 LILRB2Q8N423 598 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 OR5A2Q8NGI9 324 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 SCGB1C1Q8TD33 95 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 STARD4Q96DR4 205 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 SDSLQ96GA7 329 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 ZNF426Q9BUY5 554 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 WDR13Q9H1Z4 485 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 ZDHHC11Q9H8X9 412 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 ELOVL5Q9NYP7 299 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 FOXJ3Q9UPW0 622 aa7.99□□□□□ -1.13
VPS39-205ENST00000562258 hADV38S2A0JD32 116 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 M0R1X1 148 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 SOCS1O15524 211 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 SMPD2O60906 423 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 IFNA10P01566 189 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 COL8A1P27658 744 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 LUMP51884 338 aaPredicted RBP7.98□□□□□ -1.13
VPS39-205ENST00000562258 FGFBP3Q8TAT2 258 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 LRRC20Q8TCA0 184 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 WFIKKN1Q96NZ8 548 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 ACANP16112 2415 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 IGHA1P01876 353 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 GLRXP35754 106 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 UBE2MP61081 183 aaKnown RBP7.98□□□□□ -1.13
VPS39-205ENST00000562258 FGL1Q08830 312 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 ENDOGQ14249 297 aaKnown RBP7.98□□□□□ -1.13
VPS39-205ENST00000562258 C6orf183Q5T699 404 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 PRAMEF5Q5TYX0 476 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 DRAXINQ8NBI3 349 aaPredicted RBP7.98□□□□□ -1.13
VPS39-205ENST00000562258 BCL2L2Q92843 193 aaPredicted RBP7.98□□□□□ -1.13
VPS39-205ENST00000562258 OR5V1Q9UGF6 321 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 SHOXO15266 292 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 PPP3CBP16298 524 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 CEACAM6P40199 344 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 ARF6P62330 175 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 PDZK1IP1Q13113 114 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 ARHGEF39Q8N4T4 335 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 GVQW1Q8N7I0 195 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 ZIC4Q8N9L1 334 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 OR4A16Q8NH70 328 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 SPIN2AQ99865 258 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 SPIN2BQ9BPZ2 258 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 GHRLQ9UBU3 117 aa7.98□□□□□ -1.13
VPS39-205ENST00000562258 IGLV3-32A0A0A0MS00 114 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 PDCD6O75340 191 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 HAND1O96004 215 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 APOBEC3AP31941 199 aaPredicted RBP7.97□□□□□ -1.13
VPS39-205ENST00000562258 SLC25A53Q5H9E4 307 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 C12orf45Q8N5I9 185 aaPredicted RBP7.97□□□□□ -1.13
VPS39-205ENST00000562258 ARL6Q9H0F7 186 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 GP6Q9HCN6 339 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 MRPS18CQ9Y3D5 142 aaKnown RBP7.97□□□□□ -1.13
VPS39-205ENST00000562258 OGG1O15527 345 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 FABP7O15540 132 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 OPN1MWP04001 364 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 OPN1MW2P0DN77 364 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 OPN1MW3P0DN78 364 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 HOXB1P14653 301 aaPredicted RBP7.97□□□□□ -1.13
VPS39-205ENST00000562258 NKX2-5P52952 324 aaPredicted RBP7.97□□□□□ -1.13
VPS39-205ENST00000562258 H3F3CQ6NXT2 135 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 MARCH1Q8TCQ1 289 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 ZNF431Q8TF32 576 aaPredicted RBP7.97□□□□□ -1.13
VPS39-205ENST00000562258 ZNF251Q9BRH9 671 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 CHST5Q9GZS9 411 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 GMEB1Q9Y692 573 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 WDFY4Q6ZS81 3184 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 IGHV2OR16-5A0A0B4J2B6 119 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 J3QKU1 62 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 LY6HO94772 140 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 CLDN1O95832 211 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 KRASP01116 189 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms