RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 NOVA1P51513 510 aaKnown RBP12.15□□□□□ -0.46
VPS9D1-202ENST00000561976 HERV-K104P61576 105 aa12.15□□□□□ -0.46
VPS9D1-202ENST00000561976 SHBQ15464 509 aa12.15□□□□□ -0.46
VPS9D1-202ENST00000561976 CPEB2Q7Z5Q1 589 aaKnown RBP12.15□□□□□ -0.46
VPS9D1-202ENST00000561976 LRTM2Q8N967 370 aa12.15□□□□□ -0.46
VPS9D1-202ENST00000561976 SUMF1Q8NBK3 374 aa12.15□□□□□ -0.46
VPS9D1-202ENST00000561976 C10orf35Q96D05 121 aa12.15□□□□□ -0.46
VPS9D1-202ENST00000561976 TOLLIPQ9H0E2 274 aa12.15□□□□□ -0.46
VPS9D1-202ENST00000561976 HSF4Q9ULV5 492 aa12.15□□□□□ -0.46
VPS9D1-202ENST00000561976 CDRT15L2A8MXV6 281 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 K7N7A8 449 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 GEMIN2O14893 280 aaKnown RBP12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 DHHO43323 396 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 TIAF1O95411 115 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 PNLIPP16233 465 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 PIGYQ3MUY2 71 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 KMT5CQ86Y97 462 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 SLC35G3Q8N808 338 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 SPSB1Q96BD6 273 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 BORCS8Q96FH0 119 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 DEFB126Q9BYW3 111 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 ZNF286AQ9HBT8 521 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 RBFOX3A6NFN3 312 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 CCL20P78556 96 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 PDCD1Q15116 288 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 HEPN1Q6WQI6 88 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 RABEPKQ7Z6M1 372 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 OR2C3Q8N628 320 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 CCDC71LQ8N9Z2 235 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 SNIP1Q8TAD8 396 aaKnown RBP12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 SPACA9Q96E40 222 aaPredicted RBP12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 ABHD14AQ9BUJ0 271 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 GGACTQ9BVM4 153 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 MTCH2Q9Y6C9 303 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 CEP290O15078 2479 aa12.14□□□□□ -0.47
VPS9D1-202ENST00000561976 IGLV3-12A0A075B6K2 115 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 LOC102725191A0A1B0GVB3 256 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 ZNF727A8MUV8 499 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 PPIHO43447 177 aaKnown RBP12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 TAGLN2P37802 199 aaKnown RBP12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 NDUFA6P56556 154 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 CNN3Q15417 329 aaKnown RBP12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 HAGHQ16775 308 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 C10orf128Q5T292 105 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 OR10AD1Q8NGE0 317 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 OR14L1PQ8NHC6 308 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 MR1Q95460 341 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 NABP1Q96AH0 204 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 BOD1Q96IK1 185 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 OR6C1Q96RD1 312 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 RASL10BQ96S79 203 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 SPSB2Q99619 263 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 ANGPTL4Q9BY76 406 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 ULBP2Q9BZM5 246 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 TMED3Q9Y3Q3 217 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 IGKV1-27A0A075B6S5 117 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 ONECUT2O95948 504 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 ATP6V0CP27449 155 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 RBP2P50120 134 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 ZNF266Q14584 549 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 C1QL4Q86Z23 238 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 FBXL14Q8N1E6 418 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 NTNG2Q96CW9 530 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 JSRP1Q96MG2 331 aaPredicted RBP12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 TP53RKQ96S44 253 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 CABIN1Q9Y6J0 2220 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 NKX2-6A6NCS4 301 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 H3BQ15 152 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 SCRG1O75711 98 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 LMO1P25800 156 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 OTX1P32242 354 aaPredicted RBP12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 LTBRP36941 435 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 UBE2KP61086 200 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 ZNF674Q2M3X9 581 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 CCDC54Q8NEL0 328 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 TMEM54Q969K7 222 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 UCN2Q96RP3 112 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 UNKLQ9H9P5 680 aaKnown RBP12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 BCO1Q9HAY6 547 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 SEMA5BQ9P283 1151 aa12.13□□□□□ -0.47
VPS9D1-202ENST00000561976 ABCA7Q8IZY2 2146 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 LCATP04180 440 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 FBP1P09467 338 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 AADACP22760 399 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 S100A2P29034 98 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 RAET1LQ5VY80 246 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 OSR2Q8N2R0 312 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 OR4D5Q8NGN0 318 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 MOB3AQ96BX8 217 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 RAB39BQ96DA2 213 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 ZNF837Q96EG3 531 aaPredicted RBP12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 ST3GAL6Q9Y274 331 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 URGCP-MRPS24S4R325 110 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 C3orf85A0A1B0GTC6 90 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 A0A1B0GW64 132 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 FKBP2P26885 142 aaKnown RBP12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 NKX2-1P43699 371 aaPredicted RBP12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 HTR5AP47898 357 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 RGS19P49795 217 aa12.12□□□□□ -0.47
VPS9D1-202ENST00000561976 VAMP2P63027 116 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms