RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 OR7C1O76099 320 aaPredicted RBP11.15□□□□□ -0.63
LDLR-207ENST00000558013 CST4P01036 141 aa11.15□□□□□ -0.63
LDLR-207ENST00000558013 CRYBA1P05813 215 aa11.15□□□□□ -0.63
LDLR-207ENST00000558013 EDN3P14138 238 aa11.15□□□□□ -0.63
LDLR-207ENST00000558013 SRYQ05066 204 aa11.15□□□□□ -0.63
LDLR-207ENST00000558013 DHRS7BQ6IAN0 325 aaPredicted RBP11.15□□□□□ -0.63
LDLR-207ENST00000558013 IL34Q6ZMJ4 242 aa11.15□□□□□ -0.63
LDLR-207ENST00000558013 OR5T2Q8NGG2 359 aa11.15□□□□□ -0.63
LDLR-207ENST00000558013 M1APQ8TC57 530 aa11.15□□□□□ -0.63
LDLR-207ENST00000558013 DECR2Q9NUI1 292 aa11.15□□□□□ -0.63
LDLR-207ENST00000558013 NECAP2Q9NVZ3 263 aa11.15□□□□□ -0.63
LDLR-207ENST00000558013 TUBD1Q9UJT1 453 aa11.15□□□□□ -0.63
LDLR-207ENST00000558013 PRELID3BQ9Y3B1 194 aa11.15□□□□□ -0.63
LDLR-207ENST00000558013 CCDC163A0A0D9SF12 145 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 OR6C6A6NF89 314 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 LRRC3CA6NJW4 275 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 RRP8O43159 456 aaKnown RBP11.14□□□□□ -0.63
LDLR-207ENST00000558013 IFNA21P01568 189 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 SPP1P10451 314 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 SULT1A2P50226 295 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 PPT1P50897 306 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 IGFBP7Q16270 282 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 PLCXD3Q63HM9 321 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 NSUN5P2Q63ZY6 315 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 SPINK14Q6IE38 97 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 SPAG16Q8N0X2 631 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 OSR2Q8N2R0 312 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 SUMF1Q8NBK3 374 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 SPSB1Q96BD6 273 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 TP53RKQ96S44 253 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 OR2H1Q9GZK4 316 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 ESRP2Q9H6T0 727 aaKnown RBP11.14□□□□□ -0.63
LDLR-207ENST00000558013 DUSP1P28562 367 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 FLI1Q01543 452 aaPredicted RBP11.14□□□□□ -0.63
LDLR-207ENST00000558013 ZNF616Q08AN1 781 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 SLC25A26Q70HW3 274 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 HSD17B11Q8NBQ5 300 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 OR10Z1Q8NGY1 313 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 C20orf24Q9BUV8 137 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 NAA60Q9H7X0 242 aa11.14□□□□□ -0.63
LDLR-207ENST00000558013 RCL1Q9Y2P8 373 aaKnown RBP11.14□□□□□ -0.63
LDLR-207ENST00000558013 FAM157AC9JC47 383 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 NXPH3O95157 252 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 SNAPINO95295 136 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 CELA3AP09093 270 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 DAOP14920 347 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 FOLR3P41439 243 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 NTNG2Q96CW9 530 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 SAT2Q96F10 170 aaPredicted RBP11.13□□□□□ -0.63
LDLR-207ENST00000558013 NDRG3Q9UGV2 375 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 R4GN57 208 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 KIAA1549Q9HCM3 1950 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 hCG_38984A0A1B0GV85 526 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 TERTO14746 1132 aaKnown RBP11.13□□□□□ -0.63
LDLR-207ENST00000558013 PHF1O43189 567 aaPredicted RBP11.13□□□□□ -0.63
LDLR-207ENST00000558013 P04436 131 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 CD5P06127 495 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 AADACP22760 399 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 F2RL1P55085 397 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 ZFP36L1Q07352 338 aaKnown RBP11.13□□□□□ -0.63
LDLR-207ENST00000558013 SMCO1Q147U7 214 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 ZNF528Q3MIS6 628 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 PPP1R32Q7Z5V6 425 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 ZNF442Q9H7R0 627 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 NTN3O00634 580 aaPredicted RBP11.13□□□□□ -0.63
LDLR-207ENST00000558013 APOC1P02654 83 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 CST2P09228 141 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 MIDNQ504T8 468 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 TMEM105Q8N8V8 129 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 MSI2Q96DH6 328 aaKnown RBP11.13□□□□□ -0.63
LDLR-207ENST00000558013 KIRREL1Q96J84 757 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 HES7Q9BYE0 225 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 KCNIP3Q9Y2W7 256 aa11.13□□□□□ -0.63
LDLR-207ENST00000558013 CNN3Q15417 329 aaKnown RBP11.12□□□□□ -0.63
LDLR-207ENST00000558013 ZNF611Q8N823 705 aa11.12□□□□□ -0.63
LDLR-207ENST00000558013 CLCC1Q96S66 551 aa11.12□□□□□ -0.63
LDLR-207ENST00000558013 FGF23Q9GZV9 251 aaPredicted RBP11.12□□□□□ -0.63
LDLR-207ENST00000558013 GPR35Q9HC97 309 aa11.12□□□□□ -0.63
LDLR-207ENST00000558013 HSF4Q9ULV5 492 aa11.12□□□□□ -0.63
LDLR-207ENST00000558013 ZNF503-AS2A6NEH8 195 aa11.12□□□□□ -0.63
LDLR-207ENST00000558013 TAAR5O14804 337 aa11.12□□□□□ -0.63
LDLR-207ENST00000558013 CA11O75493 328 aa11.12□□□□□ -0.63
LDLR-207ENST00000558013 TCN2P20062 427 aa11.12□□□□□ -0.63
LDLR-207ENST00000558013 GDF1P27539 372 aa11.12□□□□□ -0.63
LDLR-207ENST00000558013 SRD5A2P31213 254 aa11.12□□□□□ -0.63
LDLR-207ENST00000558013 FAM76BQ5HYJ3 339 aa11.12□□□□□ -0.63
LDLR-207ENST00000558013 TMEM42Q69YG0 159 aa11.12□□□□□ -0.63
LDLR-207ENST00000558013 TCEAL6Q6IPX3 200 aa11.12□□□□□ -0.63
LDLR-207ENST00000558013 TIPARPQ7Z3E1 657 aaKnown RBP11.12□□□□□ -0.63
LDLR-207ENST00000558013 SLC35G3Q8N808 338 aa11.12□□□□□ -0.63
LDLR-207ENST00000558013 TCEAL3Q969E4 200 aa11.12□□□□□ -0.63
LDLR-207ENST00000558013 INTS12Q96CB8 462 aaKnown RBP11.12□□□□□ -0.63
LDLR-207ENST00000558013 C10orf35Q96D05 121 aa11.12□□□□□ -0.63
LDLR-207ENST00000558013 TIMM10BQ9Y5J6 103 aa11.12□□□□□ -0.63
LDLR-207ENST00000558013 PCSK5Q92824 1860 aa11.12□□□□□ -0.63
LDLR-207ENST00000558013 JTBO76095 146 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 HLA-HP01893 362 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 OMGP23515 440 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 ARL6IP1Q15041 203 aa11.11□□□□□ -0.63
LDLR-207ENST00000558013 ACER2Q5QJU3 275 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms