RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 LIN7BQ9HAP6 207 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 RHOFQ9HBH0 211 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 IL36GQ9NZH8 169 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 CTSZQ9UBR2 303 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 GHRLQ9UBU3 117 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 ST3GAL6Q9Y274 331 aa11.72□□□□□ -0.53
VIPAS39-208ENST00000556412 A0A0G2JK05 382 aa11.71□□□□□ -0.54
VIPAS39-208ENST00000556412 SIRPB1O00241 398 aa11.71□□□□□ -0.54
VIPAS39-208ENST00000556412 MPIG6BO95866 241 aa11.71□□□□□ -0.54
VIPAS39-208ENST00000556412 ZNF44P15621 663 aa11.71□□□□□ -0.54
VIPAS39-208ENST00000556412 MGMTP16455 207 aa11.71□□□□□ -0.54
VIPAS39-208ENST00000556412 PITPNBP48739 271 aa11.71□□□□□ -0.54
VIPAS39-208ENST00000556412 LMO4P61968 165 aa11.71□□□□□ -0.54
VIPAS39-208ENST00000556412 IL13RA1P78552 427 aa11.71□□□□□ -0.54
VIPAS39-208ENST00000556412 ESCO2Q56NI9 601 aa11.71□□□□□ -0.54
VIPAS39-208ENST00000556412 SPIN3Q5JUX0 258 aa11.71□□□□□ -0.54
VIPAS39-208ENST00000556412 IDNKQ5T6J7 187 aa11.71□□□□□ -0.54
VIPAS39-208ENST00000556412 ELP2Q6IA86 826 aa11.71□□□□□ -0.54
VIPAS39-208ENST00000556412 ZNRF1Q8ND25 227 aa11.71□□□□□ -0.54
VIPAS39-208ENST00000556412 TMEM185AQ8NFB2 350 aa11.71□□□□□ -0.54
VIPAS39-208ENST00000556412 SLC25A28Q96A46 364 aa11.71□□□□□ -0.54
VIPAS39-208ENST00000556412 FAM3DQ96BQ1 224 aa11.71□□□□□ -0.54
VIPAS39-208ENST00000556412 C1orf147Q96MC9 270 aaPredicted RBP11.71□□□□□ -0.54
VIPAS39-208ENST00000556412 GAFA1Q96PS6 74 aa11.71□□□□□ -0.54
VIPAS39-208ENST00000556412 SELENOIQ9C0D9 397 aa11.71□□□□□ -0.54
VIPAS39-208ENST00000556412 METRNQ9UJH8 293 aa11.71□□□□□ -0.54
VIPAS39-208ENST00000556412 SH2D1BO14796 132 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 PHF1O43189 567 aaPredicted RBP11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 BPNT1O95861 308 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 IL1AP01583 271 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 WNT2P09544 360 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 VSIG8P0DPA2 414 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 CD37P11049 281 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 AMY2BP19961 511 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 GABRR1P24046 479 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 TMBIM6P55061 237 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 GNB2P62879 340 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 COL10A1Q03692 680 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 BLMHQ13867 455 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 FAM166AQ6J272 317 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 SPNS3Q6ZMD2 512 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 ZNF788Q6ZQV5 615 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 USP43Q70EL4 1123 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 ST8SIA4Q92187 359 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 ISOC1Q96CN7 298 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 DCSTAMPQ9H295 470 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 CLN8Q9UBY8 286 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 ZNF222Q9UK12 451 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 FAM157AC9JC47 383 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 HSPB6O14558 160 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 DVL1O14640 695 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 GEMIN2O14893 280 aaKnown RBP11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 DEGS1O15121 323 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 NDUFB3O43676 98 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 OR7C1O76099 320 aaPredicted RBP11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 RBM11P57052 281 aaKnown RBP11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 LCN2P80188 198 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 ZNF146Q15072 292 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 TAF9Q16594 264 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 TMEM249Q2WGJ8 235 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 C2orf76Q3KRA6 126 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 FGFRL1Q8N441 504 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 KCNG3Q8TAE7 436 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 MED30Q96HR3 178 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 TMEM59Q9BXS4 323 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 MAB21L2Q9Y586 359 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 CEPT1Q9Y6K0 416 aa11.7□□□□□ -0.54
VIPAS39-208ENST00000556412 PRRC2AP48634 2157 aaKnown RBP11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 ARID1AO14497 2285 aa11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 TNFRSF13BO14836 293 aaPredicted RBP11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 SIGLEC5O15389 551 aa11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 OR2H2O95918 312 aa11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 CHRM2P08172 466 aa11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 SNRPBP14678 240 aaKnown RBP11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 NDUFB7P17568 137 aa11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 SPCS2Q15005 226 aa11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 LRRC10Q5BKY1 277 aa11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 ATPAF1Q5TC12 328 aaPredicted RBP11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 OR51T1Q8NGJ9 327 aa11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 SDSLQ96GA7 329 aa11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 C18orf12Q96KH6 178 aa11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 COX4I2Q96KJ9 171 aa11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 SSBP3Q9BWW4 388 aaPredicted RBP11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 CHST6Q9GZX3 395 aa11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 DNTTIP1Q9H147 329 aa11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 KAAG1Q9UBP8 84 aa11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 SLC25A10Q9UBX3 287 aaPredicted RBP11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 DYSFO75923 2080 aa11.69□□□□□ -0.54
VIPAS39-208ENST00000556412 OTOGQ6ZRI0 2925 aa11.68□□□□□ -0.54
VIPAS39-208ENST00000556412 F5H0A9 414 aaPredicted RBP11.68□□□□□ -0.54
VIPAS39-208ENST00000556412 H3BMQ9 156 aa11.68□□□□□ -0.54
VIPAS39-208ENST00000556412 CD99P14209 185 aa11.68□□□□□ -0.54
VIPAS39-208ENST00000556412 RANBP1P43487 201 aa11.68□□□□□ -0.54
VIPAS39-208ENST00000556412 UNC119Q13432 240 aa11.68□□□□□ -0.54
VIPAS39-208ENST00000556412 ATAD3CQ5T2N8 411 aa11.68□□□□□ -0.54
VIPAS39-208ENST00000556412 ZNF561Q8N587 486 aa11.68□□□□□ -0.54
VIPAS39-208ENST00000556412 Q8NFD4 153 aa11.68□□□□□ -0.54
VIPAS39-208ENST00000556412 H1FXQ92522 213 aaKnown RBP11.68□□□□□ -0.54
VIPAS39-208ENST00000556412 MRPS24Q96EL2 167 aaKnown RBP11.68□□□□□ -0.54
VIPAS39-208ENST00000556412 ING3Q9NXR8 418 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms