RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 Q6ZRG5 221 aa11.68□□□□□ -0.54
SHMT2-222ENST00000555774 Q6ZS49 121 aa11.68□□□□□ -0.54
SHMT2-222ENST00000555774 SKA3Q8IX90 412 aa11.68□□□□□ -0.54
SHMT2-222ENST00000555774 Q8NFD4 153 aa11.68□□□□□ -0.54
SHMT2-222ENST00000555774 PLSCR2Q9NRY7 297 aa11.68□□□□□ -0.54
SHMT2-222ENST00000555774 MLXQ9UH92 298 aa11.68□□□□□ -0.54
SHMT2-222ENST00000555774 FAM96BQ9Y3D0 163 aa11.68□□□□□ -0.54
SHMT2-222ENST00000555774 TMED3Q9Y3Q3 217 aa11.68□□□□□ -0.54
SHMT2-222ENST00000555774 SCGB1D2O95969 90 aa11.68□□□□□ -0.54
SHMT2-222ENST00000555774 MMP7P09237 267 aaPredicted RBP11.68□□□□□ -0.54
SHMT2-222ENST00000555774 FUT3P21217 361 aa11.68□□□□□ -0.54
SHMT2-222ENST00000555774 NPBWR1P48145 328 aa11.68□□□□□ -0.54
SHMT2-222ENST00000555774 HERV-K104P61576 105 aa11.68□□□□□ -0.54
SHMT2-222ENST00000555774 CBLN2Q8IUK8 224 aa11.68□□□□□ -0.54
SHMT2-222ENST00000555774 FAM219AQ8IW50 185 aa11.68□□□□□ -0.54
SHMT2-222ENST00000555774 MSI2Q96DH6 328 aaKnown RBP11.68□□□□□ -0.54
SHMT2-222ENST00000555774 MARS2Q96GW9 593 aaKnown RBP11.68□□□□□ -0.54
SHMT2-222ENST00000555774 PARPBPQ9NWS1 579 aa11.68□□□□□ -0.54
SHMT2-222ENST00000555774 ZNF175Q9Y473 711 aa11.68□□□□□ -0.54
SHMT2-222ENST00000555774 RFC3P40938 356 aa11.67□□□□□ -0.54
SHMT2-222ENST00000555774 RAB5CP51148 216 aa11.67□□□□□ -0.54
SHMT2-222ENST00000555774 FXYD4P59646 89 aa11.67□□□□□ -0.54
SHMT2-222ENST00000555774 FAM76BQ5HYJ3 339 aa11.67□□□□□ -0.54
SHMT2-222ENST00000555774 KDF1Q8NAX2 398 aaPredicted RBP11.67□□□□□ -0.54
SHMT2-222ENST00000555774 GINS3Q9BRX5 216 aa11.67□□□□□ -0.54
SHMT2-222ENST00000555774 ADAT1Q9BUB4 502 aaKnown RBP11.67□□□□□ -0.54
SHMT2-222ENST00000555774 LINC00470Q9BZP3 86 aa11.67□□□□□ -0.54
SHMT2-222ENST00000555774 FAM86C1Q9NVL1 165 aa11.67□□□□□ -0.54
SHMT2-222ENST00000555774 ZNF581Q9P0T4 197 aa11.67□□□□□ -0.54
SHMT2-222ENST00000555774 TCFL5Q9UL49 500 aa11.67□□□□□ -0.54
SHMT2-222ENST00000555774 KPTNQ9Y664 436 aa11.67□□□□□ -0.54
SHMT2-222ENST00000555774 EML6Q6ZMW3 1958 aa11.67□□□□□ -0.54
SHMT2-222ENST00000555774 SERPINA7P05543 415 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 GLAP06280 429 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 RFPL3SP0C7P2 107 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 PATE4P0C8F1 98 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 PAX6P26367 422 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 OTX2P32243 289 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 Q0VFX4 171 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 TRIM61Q5EBN2 209 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 WIPI1Q5MNZ9 446 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-222ENST00000555774 ACER2Q5QJU3 275 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 DCAF12Q5T6F0 453 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 COLCA1Q6ZS62 124 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 SAXO1Q8IYX7 474 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 MAFAQ8NHW3 353 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-222ENST00000555774 PIGCQ92535 297 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 PLA2G2EQ9NZK7 142 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 IGKV3D-15A0A087WSY6 115 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 FAM157AC9JC47 383 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 ST8SIA3O43173 380 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 TRAPPC6AO75865 159 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 EDN3P14138 238 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 CYB561P49447 251 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 UCP2P55851 309 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 GFRA1P56159 465 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 SSPNQ14714 243 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 SP6Q3SY56 376 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 LYZL2Q7Z4W2 148 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 FGFBP3Q8TAT2 258 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 GLYATL2Q8WU03 294 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 KIRREL1Q96J84 757 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 LUZP4Q9P127 313 aa11.66□□□□□ -0.54
SHMT2-222ENST00000555774 STRAPQ9Y3F4 350 aaKnown RBP11.66□□□□□ -0.54
SHMT2-222ENST00000555774 RPL36A-HNRNPH2H7BZ11 118 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 DANCRP0C864 163 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 GDF1P27539 372 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 CLDN15P56746 228 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 PHLDA2Q53GA4 152 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 FBXW12Q6X9E4 464 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 LINC00518Q8N0U6 118 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 DYRK2Q92630 601 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 ERGIC1Q969X5 290 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 SMIM3Q9BZL3 60 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 ZNF442Q9H7R0 627 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 BOKQ9UMX3 212 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-222ENST00000555774 EYSQ5T1H1 3165 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 MASP2O00187 686 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 CDS2O95674 445 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 SPP1P10451 314 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 AADACP22760 399 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 CD80P33681 288 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 RND3P61587 244 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 IQCF2Q8IXL9 164 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 ZNF611Q8N823 705 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 OR5L1Q8NGL2 311 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 OR4D5Q8NGN0 318 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 WNT2BQ93097 391 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 ABHD14BQ96IU4 210 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 ZPBPQ9BS86 351 aa11.65□□□□□ -0.54
SHMT2-222ENST00000555774 PHF1O43189 567 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-222ENST00000555774 TSPAN15O95858 294 aa11.64□□□□□ -0.55
SHMT2-222ENST00000555774 F12P00748 615 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-222ENST00000555774 PPYP01298 95 aa11.64□□□□□ -0.55
SHMT2-222ENST00000555774 COX5BP10606 129 aa11.64□□□□□ -0.55
SHMT2-222ENST00000555774 HOXA1P49639 335 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-222ENST00000555774 RAB13P51153 203 aa11.64□□□□□ -0.55
SHMT2-222ENST00000555774 PEA15Q15121 130 aa11.64□□□□□ -0.55
SHMT2-222ENST00000555774 C6orf15Q6UXA7 325 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-222ENST00000555774 SNIP1Q8TAD8 396 aaKnown RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms