RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 CPEP16870 476 aa11.66□□□□□ -0.54
PTCH1-226ENST00000553011 MAPK3P27361 379 aaPredicted RBP11.66□□□□□ -0.54
PTCH1-226ENST00000553011 ZNF93P35789 620 aaPredicted RBP11.66□□□□□ -0.54
PTCH1-226ENST00000553011 GP2P55259 537 aaKnown RBP11.66□□□□□ -0.54
PTCH1-226ENST00000553011 CAV3P56539 151 aa11.66□□□□□ -0.54
PTCH1-226ENST00000553011 FGF12P61328 243 aa11.66□□□□□ -0.54
PTCH1-226ENST00000553011 COL10A1Q03692 680 aa11.66□□□□□ -0.54
PTCH1-226ENST00000553011 PHC2Q8IXK0 858 aa11.66□□□□□ -0.54
PTCH1-226ENST00000553011 SPARTQ8N0X7 666 aa11.66□□□□□ -0.54
PTCH1-226ENST00000553011 SVOPQ8N4V2 548 aa11.66□□□□□ -0.54
PTCH1-226ENST00000553011 ZNF561Q8N587 486 aa11.66□□□□□ -0.54
PTCH1-226ENST00000553011 ASCC1Q8N9N2 400 aaKnown RBP11.66□□□□□ -0.54
PTCH1-226ENST00000553011 OR10K1Q8NGX5 313 aa11.66□□□□□ -0.54
PTCH1-226ENST00000553011 THRSPQ92748 146 aa11.66□□□□□ -0.54
PTCH1-226ENST00000553011 CPNE2Q96FN4 548 aaPredicted RBP11.66□□□□□ -0.54
PTCH1-226ENST00000553011 FAM192AQ9GZU8 254 aa11.66□□□□□ -0.54
PTCH1-226ENST00000553011 PPIL3Q9H2H8 161 aaKnown RBP11.66□□□□□ -0.54
PTCH1-226ENST00000553011 HMG20AQ9NP66 347 aa11.66□□□□□ -0.54
PTCH1-226ENST00000553011 FOXJ3Q9UPW0 622 aa11.66□□□□□ -0.54
PTCH1-226ENST00000553011 SF3B6Q9Y3B4 125 aaKnown RBP11.66□□□□□ -0.54
PTCH1-226ENST00000553011 LRRC42Q9Y546 428 aa11.66□□□□□ -0.54
PTCH1-226ENST00000553011 GPR37O15354 613 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 ZNF737O75373 536 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 SC5DO75845 299 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 CDRT1O95170 752 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 HAND1O96004 215 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 CHRM2P08172 466 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 PPIAL4GP0DN37 164 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 PTGFRP43088 359 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 ARF6P62330 175 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 ZNF146Q15072 292 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 SSX1Q16384 188 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 C11orf91Q3C1V1 193 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 ARMCX4Q5H9R4 360 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 KLF17Q5JT82 389 aaPredicted RBP11.65□□□□□ -0.54
PTCH1-226ENST00000553011 FIP1L1Q6UN15 594 aaKnown RBP11.65□□□□□ -0.54
PTCH1-226ENST00000553011 ASCL4Q6XD76 172 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 TMEM91Q6ZNR0 172 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 CEACAM19Q7Z692 300 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 PNLDC1Q8NA58 520 aaKnown RBP11.65□□□□□ -0.54
PTCH1-226ENST00000553011 LY6G5BQ8NDX9 201 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 PXT1Q8NFP0 134 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 NANPQ8TBE9 248 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 CNTD2Q9H8S5 307 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 GSTK1Q9Y2Q3 226 aa11.65□□□□□ -0.54
PTCH1-226ENST00000553011 TMEM82A0PJX8 343 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 K7N7A8 449 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 TK1P04183 234 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 LIPFP07098 398 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 MMP9P14780 707 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 MTNR1BP49286 362 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 RSU1Q15404 277 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 SPIN3Q5JUX0 258 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 ZNF773Q6PK81 442 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 JAGN1Q8N5M9 183 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 TEX29Q8N6K0 151 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 C8orf46Q8TAG6 207 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 MUL1Q969V5 352 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 UPRTQ96BW1 309 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 TBX15Q96SF7 602 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 PCGF1Q9BSM1 259 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 SIRPDQ9H106 197 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 SEBOXQ9HB31 216 aaPredicted RBP11.64□□□□□ -0.55
PTCH1-226ENST00000553011 C19orf12Q9NSK7 152 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 ONECUT1Q9UBC0 465 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 ING4Q9UNL4 249 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 COL6A5A8TX70 2615 aa11.64□□□□□ -0.55
PTCH1-226ENST00000553011 IGHV3OR16-10A0A075B7F0 116 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 A0A1W2PQ09 198 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 SIRPB1O00241 398 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 RGS9O75916 674 aaPredicted RBP11.63□□□□□ -0.55
PTCH1-226ENST00000553011 TOX4O94842 621 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 HTR3BO95264 441 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 UCHL1P09936 223 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 IGHV4-38-2P0DP08 117 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 EPHA1P21709 976 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 GABRA5P31644 462 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 FABP5Q01469 135 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 SCN1BQ07699 218 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 PDCD1Q15116 288 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 KCTD21Q4G0X4 260 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 HSD17B12Q53GQ0 312 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 UBE2UQ5VVX9 321 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 ELP2Q6IA86 826 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 C17orf107Q6ZR85 190 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 LRRTM1Q86UE6 522 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 LYPD6Q86Y78 171 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 FAM185AQ8N0U4 392 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 OR4M1Q8NGD0 313 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 WDFY2Q96P53 400 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 NR1H4Q96RI1 486 aaPredicted RBP11.63□□□□□ -0.55
PTCH1-226ENST00000553011 CHST6Q9GZX3 395 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 FAM234AQ9H0X4 552 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 RHOFQ9HBH0 211 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 TCF7L1Q9HCS4 588 aa11.63□□□□□ -0.55
PTCH1-226ENST00000553011 EXOSC4Q9NPD3 245 aaKnown RBP11.63□□□□□ -0.55
PTCH1-226ENST00000553011 TRBV23-1A0A0A0MS06 115 aa11.62□□□□□ -0.55
PTCH1-226ENST00000553011 TRAV40A0A0B4J280 105 aa11.62□□□□□ -0.55
PTCH1-226ENST00000553011 A0A1W2PP11 408 aa11.62□□□□□ -0.55
PTCH1-226ENST00000553011 SH2D1BO14796 132 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms