RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 DPM3Q9P2X0 92 aa1.68□□□□□ -2.14
PTCH1-223ENST00000551623 MRM2Q9UI43 246 aaKnown RBP1.68□□□□□ -2.14
PTCH1-223ENST00000551623 EMCNQ9ULC0 261 aa1.68□□□□□ -2.14
PTCH1-223ENST00000551623 APLNQ9ULZ1 77 aa1.68□□□□□ -2.14
PTCH1-223ENST00000551623 STUB1Q9UNE7 303 aa1.68□□□□□ -2.14
PTCH1-223ENST00000551623 SIGLEC7Q9Y286 467 aa1.68□□□□□ -2.14
PTCH1-223ENST00000551623 MRPS28Q9Y2Q9 187 aaKnown RBP1.68□□□□□ -2.14
PTCH1-223ENST00000551623 HSPG2P98160 4391 aa1.68□□□□□ -2.14
PTCH1-223ENST00000551623 IGHV4OR15-8A0A075B7B6 117 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 A0A0J9YWU9 116 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 hCG_1807616A0A1W2PRN6 198 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 OR6C68A6NDL8 312 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 PRORSD1PA6NEY8 169 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 A6NIZ1 184 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 TMEM210A6NLX4 147 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 C16orf90A8MZG2 172 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 E9PBE3 544 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 H0Y980 276 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 RER1O15258 196 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 NOS1APO75052 506 aaPredicted RBP1.67□□□□□ -2.14
PTCH1-223ENST00000551623 ACTL6BO94805 426 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 OR6A2O95222 327 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 CNIH1O95406 144 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 HLA-DQA2P01906 255 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 BCHEP06276 602 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 LINC00032P0C843 101 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 RBMY1CP0DJD4 496 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 OR5H8P0DN80 308 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 UMPSP11172 480 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 PSG2P11465 335 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 CCL3L1P16619 93 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 COX7A1P24310 79 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 BMI1P35226 326 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 CEACAM3P40198 252 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 MDH1P40925 334 aaKnown RBP1.67□□□□□ -2.14
PTCH1-223ENST00000551623 RBM34P42696 430 aaKnown RBP1.67□□□□□ -2.14
PTCH1-223ENST00000551623 GUCA1AP43080 201 aaPredicted RBP1.67□□□□□ -2.14
PTCH1-223ENST00000551623 RAP1BP61224 184 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 RPL27P61353 136 aaKnown RBP1.67□□□□□ -2.14
PTCH1-223ENST00000551623 ACTA2P62736 377 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 RAP1AP62834 184 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 GNB1P62873 340 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 ACTG2P63267 376 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 CSNK2BP67870 215 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 ACTC1P68032 377 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 ACTA1P68133 377 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 CAV1Q03135 178 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 ZNF92Q03936 586 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 MEF2CQ06413 473 aaPredicted RBP1.67□□□□□ -2.14
PTCH1-223ENST00000551623 SLC34A1Q06495 639 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 CD47Q08722 323 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 TRAP1Q12931 704 aaKnown RBP1.67□□□□□ -2.14
PTCH1-223ENST00000551623 FADDQ13158 208 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 OR1Q1Q15612 314 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 DGAT2L7PQ6IED9 249 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 LCN12Q6JVE5 192 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 CAVIN1Q6NZI2 390 aaKnown RBP1.67□□□□□ -2.14
PTCH1-223ENST00000551623 C8orf74Q6P047 294 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 IL34Q6ZMJ4 242 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 MRPL21Q7Z2W9 205 aaKnown RBP1.67□□□□□ -2.14
PTCH1-223ENST00000551623 LYG2Q86SG7 212 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 RTN4RL2Q86UN3 420 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 GTSCR1Q86UQ5 136 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 C10orf107Q8IVU9 208 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 Q8N402 240 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 ZNF561Q8N587 486 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 Q8N6K4 173 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 ZNF645Q8N7E2 425 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 LRRC75AQ8NAA5 344 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 ZNRF1Q8ND25 227 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 GJC3Q8NFK1 279 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 BBS10Q8TAM1 723 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 TWIST2Q8WVJ9 160 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 CAPSLQ8WWF8 208 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 ARPC1AQ92747 370 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 TMEM19Q96HH6 336 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 RBP7Q96R05 134 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 OR8B4Q96RC9 309 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 CDRT15Q96T59 188 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 PAFAH2Q99487 392 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 ZBTB18Q99592 522 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 NRIP2Q9BQI9 281 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 PRSS27Q9BQR3 290 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 WFDC6Q9BQY6 131 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 CLEC7AQ9BXN2 247 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 NUF2Q9BZD4 464 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 CTDSP1Q9GZU7 261 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 MFFQ9GZY8 342 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 TOLLIPQ9H0E2 274 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 CSTL1Q9H114 145 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 WDR13Q9H1Z4 485 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 TMEM133Q9H2Q1 129 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 C11orf68Q9H3H3 251 aaKnown RBP1.67□□□□□ -2.14
PTCH1-223ENST00000551623 WDR55Q9H6Y2 383 aaPredicted RBP1.67□□□□□ -2.14
PTCH1-223ENST00000551623 EGLN3Q9H6Z9 239 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 YY1AP1Q9H869 796 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 WDR76Q9H967 626 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 GNB4Q9HAV0 340 aa1.67□□□□□ -2.14
PTCH1-223ENST00000551623 ELL3Q9HB65 397 aaPredicted RBP1.67□□□□□ -2.14
PTCH1-223ENST00000551623 ABCB9Q9NP78 766 aa1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms