RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 OR10V1Q8NGI7 309 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 HES7Q9BYE0 225 aa14.28□□□□□ -0.12
CUX1-213ENST00000549414 GPR31O00270 319 aa14.27□□□□□ -0.12
CUX1-213ENST00000549414 RGS13O14921 159 aa14.27□□□□□ -0.12
CUX1-213ENST00000549414 SHOXO15266 292 aa14.27□□□□□ -0.12
CUX1-213ENST00000549414 IGLV3-19P01714 112 aa14.27□□□□□ -0.12
CUX1-213ENST00000549414 HBE1P02100 147 aa14.27□□□□□ -0.12
CUX1-213ENST00000549414 OR2Z1Q8NG97 314 aa14.27□□□□□ -0.12
CUX1-213ENST00000549414 OR10Z1Q8NGY1 313 aa14.27□□□□□ -0.12
CUX1-213ENST00000549414 EGLN1Q9GZT9 426 aa14.27□□□□□ -0.12
CUX1-213ENST00000549414 IGKV1D-43A0A0B4J1Z2 117 aa14.27□□□□□ -0.12
CUX1-213ENST00000549414 TRAF3IP2O43734 574 aaPredicted RBP14.27□□□□□ -0.12
CUX1-213ENST00000549414 DFFBO76075 338 aa14.27□□□□□ -0.12
CUX1-213ENST00000549414 FGF5P12034 268 aa14.27□□□□□ -0.12
CUX1-213ENST00000549414 SELEP16581 610 aa14.27□□□□□ -0.12
CUX1-213ENST00000549414 LGALS4P56470 323 aa14.27□□□□□ -0.12
CUX1-213ENST00000549414 USF2Q15853 346 aaPredicted RBP14.27□□□□□ -0.12
CUX1-213ENST00000549414 SSX3Q99909 188 aa14.27□□□□□ -0.12
CUX1-213ENST00000549414 GNG13Q9P2W3 67 aa14.27□□□□□ -0.12
CUX1-213ENST00000549414 MT-CO2P00403 227 aa14.27□□□□□ -0.13
CUX1-213ENST00000549414 C19orf57Q0VDD7 668 aa14.27□□□□□ -0.13
CUX1-213ENST00000549414 JMJD6Q6NYC1 403 aaPredicted RBP14.27□□□□□ -0.13
CUX1-213ENST00000549414 UNQ9370/PRO34162Q6UXP9 181 aa14.27□□□□□ -0.13
CUX1-213ENST00000549414 FAM185AQ8N0U4 392 aa14.27□□□□□ -0.13
CUX1-213ENST00000549414 HPSE2Q8WWQ2 592 aa14.27□□□□□ -0.13
CUX1-213ENST00000549414 VSIG4Q9Y279 399 aa14.27□□□□□ -0.13
CUX1-213ENST00000549414 PTPRQQ9UMZ3 2332 aa14.27□□□□□ -0.13
CUX1-213ENST00000549414 DEFB108AA8MXU0 73 aa14.27□□□□□ -0.13
CUX1-213ENST00000549414 CD1AP06126 327 aa14.27□□□□□ -0.13
CUX1-213ENST00000549414 CD37P11049 281 aa14.27□□□□□ -0.13
CUX1-213ENST00000549414 KITLGP21583 273 aa14.27□□□□□ -0.13
CUX1-213ENST00000549414 RPS4Y2Q8TD47 263 aa14.27□□□□□ -0.13
CUX1-213ENST00000549414 ZNF355PQ9NSJ1 428 aa14.27□□□□□ -0.13
CUX1-213ENST00000549414 ZNF391Q9UJN7 358 aa14.27□□□□□ -0.13
CUX1-213ENST00000549414 ATP6V1G2-DDX39BF2Z307 99 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 GPR12P47775 334 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 IFITM2Q01629 132 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 HIST2H3PS2Q5TEC6 136 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 CISD2Q8N5K1 135 aaKnown RBP14.26□□□□□ -0.13
CUX1-213ENST00000549414 C2CD4CQ8TF44 421 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 HGDQ93099 445 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 NIPSNAP3BQ9BS92 247 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 CHST5Q9GZS9 411 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 NARFLQ9H6Q4 476 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 RAB18Q9NP72 206 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 LRRC30A6NM36 301 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 GABRA1P14867 456 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 TAS2R30P59541 319 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 NKX6-1P78426 367 aaPredicted RBP14.26□□□□□ -0.13
CUX1-213ENST00000549414 PCOLCEQ15113 449 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 SLC38A6Q8IZM9 456 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 OR10AD1Q8NGE0 317 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 GPR87Q9BY21 358 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 SLC7A10Q9NS82 523 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 SERTAD4Q9NUC0 356 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 CST2P09228 141 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 PMP22Q01453 160 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 MPPED2Q15777 294 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 TMEM255AQ5JRV8 349 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 FAM96BQ9Y3D0 163 aa14.26□□□□□ -0.13
CUX1-213ENST00000549414 TRBV5-7A0A0A0MS05 114 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 FTH1P19P0C7X4 201 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 Q5BKY6 102 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 RAB39BQ96DA2 213 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 KLHDC3Q9BQ90 382 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 A0A0G2JK05 382 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 NGFP01138 241 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 TAGLN2P37802 199 aaKnown RBP14.25□□□□□ -0.13
CUX1-213ENST00000549414 RPL7L1Q6DKI1 246 aaKnown RBP14.25□□□□□ -0.13
CUX1-213ENST00000549414 RGS7BPQ6MZT1 257 aaPredicted RBP14.25□□□□□ -0.13
CUX1-213ENST00000549414 RPUSD3Q6P087 351 aaKnown RBP14.25□□□□□ -0.13
CUX1-213ENST00000549414 ANGPTL4Q9BY76 406 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 RIMS4Q9H426 269 aaPredicted RBP14.25□□□□□ -0.13
CUX1-213ENST00000549414 ANAPC1Q9H1A4 1944 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 ADAM20O43506 726 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 C17orf78Q8N4C9 275 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 OR6S1Q8NH40 331 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 C22orf15Q8WYQ4 148 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 CLDN23Q96B33 292 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 TECTBQ96PL2 329 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 CRHP06850 196 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 PSG4Q00888 419 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 OR11H4Q8NGC9 324 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 ZNF488Q96MN9 340 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 HIPK2Q9H2X6 1198 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 NAA60Q9H7X0 242 aa14.25□□□□□ -0.13
CUX1-213ENST00000549414 IGHV3-43A0A0B4J1X8 118 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 HMSDA8MTL9 139 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 UMAD1C9J7I0 102 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 LYPD3O95274 346 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 IGHV3-43DP0DP04 118 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 CFHR1Q03591 330 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 ADIRFQ15847 76 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 SLC25A42Q86VD7 318 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 CA5BP1Q8WTZ4 195 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 LPAR5Q9H1C0 372 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 PIEZO1Q92508 2521 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 COX6A1P12074 109 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 FAM27BQ5VT28 67 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 GALMQ96C23 342 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms