RNA–Protein interactions for RNA: ENST00000548938.5

HDAC7-228, Transcript of histone deacetylase 7, humanhuman

TSL 5

Gene HDAC7, Length 2,719 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC7-228ENST00000548938 GAR1Q9NY12 217 aaKnown RBP11.95□□□□□ -0.5
HDAC7-228ENST00000548938 WDR87Q6ZQQ6 2873 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 RBFOX3A6NFN3 312 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 ETV2O00321 342 aaPredicted RBP11.94□□□□□ -0.5
HDAC7-228ENST00000548938 SPRY1O43609 319 aaPredicted RBP11.94□□□□□ -0.5
HDAC7-228ENST00000548938 DBHP09172 617 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 AFF3P51826 1226 aaKnown RBP11.94□□□□□ -0.5
HDAC7-228ENST00000548938 HIST3H3Q16695 136 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 SPSB3Q6PJ21 355 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 SPNS3Q6ZMD2 512 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 D2HGDHQ8N465 521 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 SPEM1Q8N4L4 309 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 LRTM2Q8N967 370 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 NTNG2Q96CW9 530 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 NELFAQ9H3P2 528 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 PRDM6Q9NQX0 595 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 HSF4Q9ULV5 492 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 CNTRLQ7Z7A1 2325 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 SPAG17Q6Q759 2223 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 FAM24AA6NFZ4 105 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 ZNF726A6NNF4 738 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 ATP6V0CP27449 155 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 TAGLN2P37802 199 aaKnown RBP11.94□□□□□ -0.5
HDAC7-228ENST00000548938 CFHR1Q03591 330 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 ZNF610Q8N9Z0 462 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 OR2G3Q8NGZ4 309 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 LIPGQ9Y5X9 500 aa11.94□□□□□ -0.5
HDAC7-228ENST00000548938 A0A0U1RQV5 110 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 PHF1O43189 567 aaPredicted RBP11.93□□□□□ -0.5
HDAC7-228ENST00000548938 PRSS12P56730 875 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 ERVFRD-1P60508 538 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 UBE2KP61086 200 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 RND3P61587 244 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 DEFA6Q01524 100 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 ELOBQ15370 118 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 RSPO1Q2MKA7 263 aaPredicted RBP11.93□□□□□ -0.5
HDAC7-228ENST00000548938 TMEM176BQ3YBM2 270 aaPredicted RBP11.93□□□□□ -0.5
HDAC7-228ENST00000548938 MEX3BQ6ZN04 569 aaKnown RBP11.93□□□□□ -0.5
HDAC7-228ENST00000548938 LGI3Q8N145 548 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 SLC35G3Q8N808 338 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 NAXEQ8NCW5 288 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 ADPRHL1Q8NDY3 354 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 SPOCK3Q9BQ16 436 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 SHANK1Q9Y566 2161 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 IGSF23A1L1A6 192 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 HSD17B6O14756 317 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 ATXN7O15265 892 aaPredicted RBP11.93□□□□□ -0.5
HDAC7-228ENST00000548938 HEXBP07686 556 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 OMGP23515 440 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 CTSSP25774 331 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 MTCP1P56278 107 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 CLDN17P56750 224 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 PDZD11Q5EBL8 140 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 SLC22A25Q6T423 547 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 C17orf82Q86X59 251 aaPredicted RBP11.93□□□□□ -0.5
HDAC7-228ENST00000548938 SUMF1Q8NBK3 374 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 OR4D5Q8NGN0 318 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 OR10D4PQ8NGN7 298 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 RHOVQ96L33 236 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 OXGR1Q96P68 337 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 ZNF700Q9H0M5 742 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 PCED1AQ9H1Q7 454 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 HS3ST3B1Q9Y662 390 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 UNC13CQ8NB66 2214 aa11.93□□□□□ -0.5
HDAC7-228ENST00000548938 TGIF2-C20orf24A0A0A6YYL0 155 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 TRBV11-1A0A0K0K1C0 115 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 HIST1H2BKO60814 126 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 ONECUT2O95948 504 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 HIST1H2BJP06899 126 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 SRP19P09132 144 aaKnown RBP11.92□□□□□ -0.5
HDAC7-228ENST00000548938 HIST1H2BOP23527 126 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 HIST1H2BBP33778 126 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 HIST1H2BDP58876 126 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 HIST1H2BCP62807 126 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 DLK1P80370 383 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 HIST2H2BEQ16778 126 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 SLC25A53Q5H9E4 307 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.92□□□□□ -0.5
HDAC7-228ENST00000548938 PHYHD1Q5SRE7 291 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 GFI1BQ5VTD9 330 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 CPEB2Q7Z5Q1 589 aaKnown RBP11.92□□□□□ -0.5
HDAC7-228ENST00000548938 OR2C3Q8N628 320 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 PLPP5Q8NEB5 264 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 OR10G3Q8NGC4 313 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 HIST1H2BHQ93079 126 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 CLDN23Q96B33 292 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 RBM14Q96PK6 669 aaKnown RBP11.92□□□□□ -0.5
HDAC7-228ENST00000548938 TP53RKQ96S44 253 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 HIST1H2BNQ99877 126 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 HIST1H2BMQ99879 126 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 PRDM13Q9H4Q3 707 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 OPA3Q9H6K4 179 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 PARPBPQ9NWS1 579 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 ZNF724A8MTY0 619 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 MSR1P21757 451 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 PTGDSP41222 190 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 RGS19P49795 217 aa11.92□□□□□ -0.5
HDAC7-228ENST00000548938 ENDOGQ14249 297 aaKnown RBP11.92□□□□□ -0.5
HDAC7-228ENST00000548938 GNMTQ14749 295 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms