RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 OR2AE1Q8NHA4 323 aa2.2□□□□□ -2.06
VPS29-205ENST00000548539 UBA3Q8TBC4 463 aa2.2□□□□□ -2.06
VPS29-205ENST00000548539 ZMYND19Q96E35 227 aaPredicted RBP2.2□□□□□ -2.06
VPS29-205ENST00000548539 PPP1R36Q96LQ0 422 aa2.2□□□□□ -2.06
VPS29-205ENST00000548539 POMKQ9H5K3 350 aa2.2□□□□□ -2.06
VPS29-205ENST00000548539 ENPP5Q9UJA9 477 aa2.2□□□□□ -2.06
VPS29-205ENST00000548539 ZNF780BQ9Y6R6 833 aa2.2□□□□□ -2.06
VPS29-205ENST00000548539 SCN1AP35498 2009 aa2.2□□□□□ -2.06
VPS29-205ENST00000548539 GOLGA8QA0A0J9YX86 632 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 KIR2DS1A0A191URI9 304 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.19□□□□□ -2.06
VPS29-205ENST00000548539 H3BP45 60 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 K7ERQ8 282 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 SHOX2O60902 331 aaPredicted RBP2.19□□□□□ -2.06
VPS29-205ENST00000548539 CST4P01036 141 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 MAGEA3P43357 314 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 FMODQ06828 376 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 BNIP2Q12982 314 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 IL15RAQ13261 267 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 TMED1Q13445 227 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 TRAM1Q15629 374 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 PSG3Q16557 428 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 ATP6AP1LQ52LC2 224 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 CLLU1OSQ5K130 101 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 FAM104BQ5XKR9 115 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 HBMQ6B0K9 141 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 Q6ZT83 130 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 AHSA2Q719I0 299 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 GALNT10Q86SR1 603 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 ZFP62Q8NB50 900 aaPredicted RBP2.19□□□□□ -2.06
VPS29-205ENST00000548539 ZNF680Q8NEM1 530 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 OR6K3Q8NGY3 331 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 TMEM239Q8WW34 195 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 OR5P2Q8WZ92 322 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 CCL17Q92583 94 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 CCDC124Q96CT7 223 aaKnown RBP2.19□□□□□ -2.06
VPS29-205ENST00000548539 PEBP4Q96S96 227 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 SHANK2-AS3Q9BTD1 123 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 THTPAQ9BU02 230 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 ZNF436Q9C0F3 470 aaPredicted RBP2.19□□□□□ -2.06
VPS29-205ENST00000548539 GOLPH3Q9H4A6 298 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 VSIRQ9H7M9 311 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 RDH14Q9HBH5 336 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 FAM60AQ9NP50 221 aa2.19□□□□□ -2.06
VPS29-205ENST00000548539 A0A1B0GXF2 115 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 OR6C70A6NIJ9 312 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 UPK2O00526 184 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 YKT6O15498 198 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 COX7A2P2O60397 106 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 PFN1P07737 140 aaKnown RBP2.18□□□□□ -2.06
VPS29-205ENST00000548539 IMPA1P29218 277 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 HTR2BP41595 481 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 RAB25P57735 213 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 TSPAN5P62079 268 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 RPS11P62280 158 aaKnown RBP eCLIP2.18□□□□□ -2.06
VPS29-205ENST00000548539 PRKCDQ05655 676 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 TRIP13Q15645 432 aaPredicted RBP2.18□□□□□ -2.06
VPS29-205ENST00000548539 Q499Y3 187 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 TMEM69Q5SWH9 247 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 TMEM144Q7Z5S9 345 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 OR4K17Q8NGC6 315 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 NELFBQ8WX92 580 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 IFT81Q8WYA0 676 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 LINC01587Q99440 93 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 ANAPC13Q9BS18 74 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 RTBDNQ9BSG5 229 aaPredicted RBP2.18□□□□□ -2.06
VPS29-205ENST00000548539 ANGPTL4Q9BY76 406 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 SLC25A31Q9H0C2 315 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 TREM1Q9NP99 234 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 CHMP5Q9NZZ3 219 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 HMGXB4Q9UGU5 601 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 TAC3Q9UHF0 121 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 SLC22A14Q9Y267 594 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 ADAMTSL3P82987 1691 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 C2orf16Q68DN1 1984 aa2.18□□□□□ -2.06
VPS29-205ENST00000548539 ZNF233A6NK53 670 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 ISLRO14498 428 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 FFAR1O14842 300 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 GYG2O15488 501 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 KCNK2O95069 426 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 LDOC1O95751 146 aaPredicted RBP2.17□□□□□ -2.06
VPS29-205ENST00000548539 RNASE2P10153 161 aaKnown RBP2.17□□□□□ -2.06
VPS29-205ENST00000548539 HLA-DMAP28067 261 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 LGALS7P47929 136 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 NUDT2P50583 147 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 AQP5P55064 265 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 TTMPQ5BVD1 217 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 TPGS1Q6ZTW0 290 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 COPS6Q7L5N1 327 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 C10orf107Q8IVU9 208 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 LYPD1Q8N2G4 141 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 SPICQ8N5J4 248 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 C1orf64Q8NEQ6 169 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 OR8S1Q8NH09 359 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 C2orf15Q8WU43 125 aaKnown RBP2.17□□□□□ -2.06
VPS29-205ENST00000548539 TWIST2Q8WVJ9 160 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 YPEL4Q96NS1 127 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 APOL4Q9BPW4 351 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 ULBP1Q9BZM6 244 aa2.17□□□□□ -2.06
VPS29-205ENST00000548539 LHX5Q9H2C1 402 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms