RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 COMMD7Q86VX2 200 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 TMEM200AQ86VY9 491 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 CXorf67Q86X51 503 aaPredicted RBP9.52□□□□□ -0.89
CUX1-212ENST00000547394 C9orf106Q8NAJ2 232 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 C10orf35Q96D05 121 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 DHRS9Q9BPW9 319 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 METTL8Q9H825 291 aaKnown RBP9.52□□□□□ -0.89
CUX1-212ENST00000547394 RNF122Q9H9V4 155 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 ANAPC10Q9UM13 185 aa9.52□□□□□ -0.89
CUX1-212ENST00000547394 POLEQ07864 2286 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 PLCE1Q9P212 2302 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 SIGLEC5O15389 551 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 RP2O75695 350 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 DUS4LO95620 317 aaKnown RBP9.51□□□□□ -0.89
CUX1-212ENST00000547394 PDGFAP04085 211 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 RBM11P57052 281 aaKnown RBP9.51□□□□□ -0.89
CUX1-212ENST00000547394 ZDHHC23Q8IYP9 409 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 ARRDC1Q8N5I2 433 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 OR5T2Q8NGG2 359 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 RDH5Q92781 318 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 BCL2L2Q92843 193 aaPredicted RBP9.51□□□□□ -0.89
CUX1-212ENST00000547394 SPSB4Q96A44 273 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 APOBEC3DQ96AK3 386 aaPredicted RBP9.51□□□□□ -0.89
CUX1-212ENST00000547394 VRK1Q99986 396 aaPredicted RBP9.51□□□□□ -0.89
CUX1-212ENST00000547394 NUDT16L1Q9BRJ7 211 aaKnown RBP9.51□□□□□ -0.89
CUX1-212ENST00000547394 OR2J1Q9GZK6 312 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 COMMD9Q9P000 198 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 BET1O15155 118 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 MPGP29372 298 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 FCGR2CP31995 323 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 LUMP51884 338 aaPredicted RBP9.51□□□□□ -0.89
CUX1-212ENST00000547394 TAS2R46P59540 309 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 DHODHQ02127 395 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 IKZF1Q13422 519 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 LHFPL1Q86WI0 220 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 RGCCQ9H4X1 137 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 DLL3Q9NYJ7 618 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 SPEF1Q9Y4P9 236 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 NCOR2Q9Y618 2525 aa9.51□□□□□ -0.89
CUX1-212ENST00000547394 TEX13DA0A0J9YY54 714 aaPredicted RBP9.5□□□□□ -0.89
CUX1-212ENST00000547394 H0YIZ8 118 aa9.5□□□□□ -0.89
CUX1-212ENST00000547394 I3L521 148 aa9.5□□□□□ -0.89
CUX1-212ENST00000547394 PRKACAP17612 351 aa9.5□□□□□ -0.89
CUX1-212ENST00000547394 TBPP20226 339 aa9.5□□□□□ -0.89
CUX1-212ENST00000547394 S100A10P60903 97 aa9.5□□□□□ -0.89
CUX1-212ENST00000547394 C11orf87Q6NUJ2 197 aa9.5□□□□□ -0.89
CUX1-212ENST00000547394 OR5L1Q8NGL2 311 aa9.5□□□□□ -0.89
CUX1-212ENST00000547394 RRNAD1Q96FB5 475 aaKnown RBP9.5□□□□□ -0.89
CUX1-212ENST00000547394 PQLC2LA1A4F0 135 aa9.5□□□□□ -0.89
CUX1-212ENST00000547394 RNF222A6NCQ9 220 aa9.5□□□□□ -0.89
CUX1-212ENST00000547394 SFT2D2O95562 160 aa9.5□□□□□ -0.89
CUX1-212ENST00000547394 PTPRBP23467 1997 aa9.5□□□□□ -0.89
CUX1-212ENST00000547394 FPR2P25090 351 aa9.5□□□□□ -0.89
CUX1-212ENST00000547394 NSUN5P2Q63ZY6 315 aa9.5□□□□□ -0.89
CUX1-212ENST00000547394 ZNF660Q6AZW8 331 aaPredicted RBP9.5□□□□□ -0.89
CUX1-212ENST00000547394 CLEC9AQ6UXN8 241 aa9.5□□□□□ -0.89
CUX1-212ENST00000547394 ZNF471Q9BX82 626 aaPredicted RBP9.5□□□□□ -0.89
CUX1-212ENST00000547394 OR5AC2Q9NZP5 309 aa9.5□□□□□ -0.89
CUX1-212ENST00000547394 KCNMB2Q9Y691 235 aa9.5□□□□□ -0.89
CUX1-212ENST00000547394 TPRP12270 2363 aaKnown RBP9.5□□□□□ -0.89
CUX1-212ENST00000547394 PKDREJQ9NTG1 2253 aa9.5□□□□□ -0.89
CUX1-212ENST00000547394 MSGN1A6NI15 193 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 H0YL77 283 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 SLC33A1O00400 549 aaPredicted RBP9.49□□□□□ -0.89
CUX1-212ENST00000547394 KLK10O43240 276 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 RPS2P15880 293 aaKnown RBP9.49□□□□□ -0.89
CUX1-212ENST00000547394 MPZP25189 248 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 CALCRP30988 508 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 ARR3P36575 388 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 MPPED2Q15777 294 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 TFAP2EQ6VUC0 442 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 PRR18Q8N4B5 295 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 LRRC20Q8TCA0 184 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 DCUN1D4Q92564 292 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 EXTL1Q92935 676 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 GSX2Q9BZM3 304 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 OPN3Q9H1Y3 402 aaPredicted RBP9.49□□□□□ -0.89
CUX1-212ENST00000547394 ZGRF1Q86YA3 2104 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 HMSDA8MTL9 139 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 LGALS8O00214 317 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 PDCD6O75340 191 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 CBX5P45973 191 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 PIGPP57054 158 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 RAB14P61106 215 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 GALNT11Q8NCW6 608 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 MYOZ1Q9NP98 299 aaPredicted RBP9.49□□□□□ -0.89
CUX1-212ENST00000547394 SCGB1D2O95969 90 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 SCTP09683 121 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 CEBPDP49716 269 aaPredicted RBP9.49□□□□□ -0.89
CUX1-212ENST00000547394 UBE2NP61088 152 aaKnown RBP9.49□□□□□ -0.89
CUX1-212ENST00000547394 CEACAM21Q3KPI0 293 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 ACTBL2Q562R1 376 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 NHLRC3Q5JS37 347 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 C20orf204Q6ZNR8 217 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 PEG10Q86TG7 708 aaKnown RBP9.49□□□□□ -0.89
CUX1-212ENST00000547394 HIST1H2AAQ96QV6 131 aa9.49□□□□□ -0.89
CUX1-212ENST00000547394 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.49□□□□□ -0.893e-6■■□□□ 13.5
CUX1-212ENST00000547394 C14orf166Q9Y224 244 aaKnown RBP9.49□□□□□ -0.89
CUX1-212ENST00000547394 SHOXO15266 292 aa9.48□□□□□ -0.89
CUX1-212ENST00000547394 CD8AP01732 235 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms