RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 PATJQ8NI35 1801 aa12.6□□□□□ -0.39
LIMS1-215ENST00000544547 PRR32B1ATL7 298 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 SPINT1O43278 529 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 IGKV1D-16P01601 117 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 RAB4AP20338 218 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 HOXA5P20719 270 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 ZNF133P52736 654 aaPredicted RBP12.59□□□□□ -0.39
LIMS1-215ENST00000544547 PTTG1IPP53801 180 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 OR1D5P58170 312 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 ZNF92Q03936 586 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 STPG1Q5TH74 334 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 SFTPA2Q8IWL1 248 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 ERGIC1Q969X5 290 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 VAMP8Q9BV40 100 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 ZDHHC11Q9H8X9 412 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 PAM16Q9Y3D7 125 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 HS3ST3A1Q9Y663 406 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 FAM3AP98173 230 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 TMEM267Q0VDI3 215 aaPredicted RBP12.59□□□□□ -0.39
LIMS1-215ENST00000544547 PYY3Q5JQD4 70 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 GFI1BQ5VTD9 330 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 HOGA1Q86XE5 327 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 A8MXE2 369 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 ABHD16AO95870 558 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 ENDOGQ14249 297 aaKnown RBP12.59□□□□□ -0.39
LIMS1-215ENST00000544547 CATSPERDQ86XM0 798 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 C22orf15Q8WYQ4 148 aa12.59□□□□□ -0.39
LIMS1-215ENST00000544547 UTP23Q9BRU9 249 aaKnown RBP12.59□□□□□ -0.39
LIMS1-215ENST00000544547 HDHD3Q9BSH5 251 aaPredicted RBP12.59□□□□□ -0.39
LIMS1-215ENST00000544547 TRBV5-7A0A0A0MS05 114 aa12.58□□□□□ -0.39
LIMS1-215ENST00000544547 SERPINE3A8MV23 424 aa12.58□□□□□ -0.39
LIMS1-215ENST00000544547 TCN2P20062 427 aa12.58□□□□□ -0.39
LIMS1-215ENST00000544547 UBE2G2P60604 165 aa12.58□□□□□ -0.39
LIMS1-215ENST00000544547 DGAT2L6Q6ZPD8 337 aa12.58□□□□□ -0.39
LIMS1-215ENST00000544547 ANKRD9Q96BM1 317 aaPredicted RBP12.58□□□□□ -0.39
LIMS1-215ENST00000544547 MFRPQ9BY79 579 aa12.58□□□□□ -0.39
LIMS1-215ENST00000544547 AURKAIP1Q9NWT8 199 aaPredicted RBP12.58□□□□□ -0.39
LIMS1-215ENST00000544547 FKBP11Q9NYL4 201 aa12.58□□□□□ -0.39
LIMS1-215ENST00000544547 ICAM5Q9UMF0 924 aa12.58□□□□□ -0.39
LIMS1-215ENST00000544547 GBF1Q92538 1859 aa12.58□□□□□ -0.4
LIMS1-215ENST00000544547 RAMP1O60894 148 aa12.58□□□□□ -0.4
LIMS1-215ENST00000544547 PEBP1P30086 187 aaKnown RBP12.58□□□□□ -0.4
LIMS1-215ENST00000544547 GABRA4P48169 554 aa12.58□□□□□ -0.4
LIMS1-215ENST00000544547 ZNF117Q03924 483 aa12.58□□□□□ -0.4
LIMS1-215ENST00000544547 SPNS3Q6ZMD2 512 aa12.58□□□□□ -0.4
LIMS1-215ENST00000544547 FGF14Q92915 247 aa12.58□□□□□ -0.4
LIMS1-215ENST00000544547 RNF126Q9BV68 326 aa12.58□□□□□ -0.4
LIMS1-215ENST00000544547 TRAPPC1Q9Y5R8 145 aa12.58□□□□□ -0.4
LIMS1-215ENST00000544547 ZNF574Q6ZN55 896 aaPredicted RBP12.58□□□□□ -0.4
LIMS1-215ENST00000544547 OR10AD1Q8NGE0 317 aa12.58□□□□□ -0.4
LIMS1-215ENST00000544547 MPDZO75970 2070 aa12.58□□□□□ -0.4
LIMS1-215ENST00000544547 H3BMH7 237 aa12.58□□□□□ -0.4
LIMS1-215ENST00000544547 ADAM20O43506 726 aa12.58□□□□□ -0.4
LIMS1-215ENST00000544547 P2RY1P47900 373 aa12.58□□□□□ -0.4
LIMS1-215ENST00000544547 VHLLQ6RSH7 139 aa12.58□□□□□ -0.4
LIMS1-215ENST00000544547 BIVMQ86UB2 503 aa12.58□□□□□ -0.4
LIMS1-215ENST00000544547 RPS19BP1Q86WX3 136 aaKnown RBP12.58□□□□□ -0.4
LIMS1-215ENST00000544547 NT5CQ8TCD5 201 aa12.58□□□□□ -0.4
LIMS1-215ENST00000544547 MUCL1Q96DR8 90 aa12.58□□□□□ -0.4
LIMS1-215ENST00000544547 NAA60Q9H7X0 242 aa12.58□□□□□ -0.4
LIMS1-215ENST00000544547 ESPL1Q14674 2120 aa12.58□□□□□ -0.4
LIMS1-215ENST00000544547 LOC102724200A0A096LPH7 203 aaPredicted RBP12.57□□□□□ -0.4
LIMS1-215ENST00000544547 FGF16O43320 207 aa12.57□□□□□ -0.4
LIMS1-215ENST00000544547 OPN1MWP04001 364 aa12.57□□□□□ -0.4
LIMS1-215ENST00000544547 OPN1MW2P0DN77 364 aa12.57□□□□□ -0.4
LIMS1-215ENST00000544547 OPN1MW3P0DN78 364 aa12.57□□□□□ -0.4
LIMS1-215ENST00000544547 TNFSF4P23510 183 aa12.57□□□□□ -0.4
LIMS1-215ENST00000544547 DYNLT3P51808 116 aa12.57□□□□□ -0.4
LIMS1-215ENST00000544547 OR13G1Q8NGZ3 307 aa12.57□□□□□ -0.4
LIMS1-215ENST00000544547 M1APQ8TC57 530 aa12.57□□□□□ -0.4
LIMS1-215ENST00000544547 RAB9BQ9NP90 201 aa12.57□□□□□ -0.4
LIMS1-215ENST00000544547 NOSIPQ9Y314 301 aaKnown RBP12.57□□□□□ -0.4
LIMS1-215ENST00000544547 A0A1B0GTI1 187 aa12.57□□□□□ -0.4
LIMS1-215ENST00000544547 MT-CO2P00403 227 aa12.57□□□□□ -0.4
LIMS1-215ENST00000544547 MMP16P51512 607 aa12.57□□□□□ -0.4
LIMS1-215ENST00000544547 ZNF90Q03938 601 aa12.57□□□□□ -0.4
LIMS1-215ENST00000544547 TMEM241Q24JQ0 296 aa12.57□□□□□ -0.4
LIMS1-215ENST00000544547 MYPOPQ86VE0 399 aaPredicted RBP12.57□□□□□ -0.4
LIMS1-215ENST00000544547 KDF1Q8NAX2 398 aaPredicted RBP12.57□□□□□ -0.4
LIMS1-215ENST00000544547 MCHR2Q969V1 340 aa12.57□□□□□ -0.4
LIMS1-215ENST00000544547 CALHM2Q9HA72 323 aa12.57□□□□□ -0.4
LIMS1-215ENST00000544547 ZNF107Q9UII5 783 aaPredicted RBP12.57□□□□□ -0.4
LIMS1-215ENST00000544547 MMP17Q9ULZ9 603 aa12.57□□□□□ -0.4
LIMS1-215ENST00000544547 YBX2Q9Y2T7 364 aaKnown RBP12.57□□□□□ -0.4
LIMS1-215ENST00000544547 C20orf202A1L168 122 aa12.57□□□□□ -0.4
LIMS1-215ENST00000544547 SNRPCP09234 159 aaKnown RBP12.57□□□□□ -0.4
LIMS1-215ENST00000544547 HIST1H1BP16401 226 aaKnown RBP12.57□□□□□ -0.4
LIMS1-215ENST00000544547 RPS23P62266 143 aaKnown RBP12.57□□□□□ -0.4
LIMS1-215ENST00000544547 EWSR1Q01844 656 aaKnown RBP eCLIP12.57□□□□□ -0.4
LIMS1-215ENST00000544547 LTC4SQ16873 150 aa12.57□□□□□ -0.4
LIMS1-215ENST00000544547 ZNF684Q5T5D7 378 aa12.57□□□□□ -0.4
LIMS1-215ENST00000544547 A0A1B0GX78 115 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 KITLGP21583 273 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 GABRA2P47869 451 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 RND3P61587 244 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 ATG4DQ86TL0 474 aaPredicted RBP12.56□□□□□ -0.4
LIMS1-215ENST00000544547 PLA2G2FQ9BZM2 168 aa12.56□□□□□ -0.4
LIMS1-215ENST00000544547 RPLP1P05386 114 aaKnown RBP12.56□□□□□ -0.4
LIMS1-215ENST00000544547 MGST1P10620 155 aaKnown RBP12.56□□□□□ -0.4
LIMS1-215ENST00000544547 HIST1H3AP68431 136 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms